Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3212 |
Symbol | |
ID | 5210183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 4049790 |
End bp | 4050956 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640596804 |
Product | cyclic nucleotide-binding protein |
Protein accession | YP_001277523 |
Protein GI | 148657318 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.868968 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.113236 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTTCAAAG GCTGGTTTCG ACGCAGAGCA ACCGTCACTG CCACACCGTC CAACAGCACC TATCGGCATG GCAACGACAC GTTGATCGAA CTGCGCAACG TCACCAAAGT ATTCGAGACA GCCGCAGGAC CCTTTACCGC CCTCGACAAC ATCACGCTCA ATGTAGACCG CGGTGAATTC GTGGCGATCA TCGGCAAGTC GGGAAGCGGC AAATCCACTC TTATGAACAT GATCTCCGGG ATCGACCGAC CCACATCGGG CGAAGTGTTC ATTGGCGATA CCGCTGTACA CACCCTGAAC GAGAGTGAGA TGGCCGTCTG GCGCGGGCGC AACGTCGGGA TCGTGTTTCA GTTCTTCCAG TTGTTGCCCG CGCTCTCACT GGTCGAGAAC GTGATGCTGC CGATGGACTT CTGCAACATG TTCACGCCGC GCGAACGACG CGAACGGGCG ATGATGCTCC TCGATCAGGT CGGCATGGCC GACCAGGCGC ATAAACTGCC ATCCGCCATA TCCGGCGGGC AGCAGCAACG AGTCGCCATT GCCCGCGCCC TCGCCAACGA TCCGCCGATC ATTCTTGCCG ATGAGCCAAC TGGCAACCTC GACTCGAAAA CGGCGCAACA GGTGTTCACC CTCTTCGAGA AGCTGGTCGA TCAGGGCAAA ACGATCCTGA TGGTCACCCA CGACAGCGAT ATGGCGCGGC GTGTCAGTCG CGCTGTGATC ATCGCCGACG GTCGGATCGT CAACGAATAC GTTGCACAGG CGCTCCCCGC CCTGACGCTC GATCAACTGG GCTGGGTGAT GCGTCACGCC GACATCCGCA CGTATGCTCC CGGCGCTGTC ATTATCGAGC AGGGCAGCCC GGCAGACAAC TTCTACATCA TTACCAGAGG GGACGTCGAG GTGTTCATCG AACATCCCGA CGGCGGCGAA ATCATTGTCA ACCACCTGAG CACCGGTTCC TACTTCGGCG AAATCGGTCT GCTGCACCAG GGGCGTCGCA CCGCTGGCGT GCGCGCCAGT TTTGCGACCG GCTGCGATGC GGCAGTGCTC GATCAGCAGG AGTTCCACAC GTTACTGGCG GAATCGGAAG CCACCAGGAA CGCCATTGAA CGGGTTGCGC GCGAACGTCA TTCACGAACG CAGGCAGCAA CCCACGACGA CATGTAG
|
Protein sequence | MFKGWFRRRA TVTATPSNST YRHGNDTLIE LRNVTKVFET AAGPFTALDN ITLNVDRGEF VAIIGKSGSG KSTLMNMISG IDRPTSGEVF IGDTAVHTLN ESEMAVWRGR NVGIVFQFFQ LLPALSLVEN VMLPMDFCNM FTPRERRERA MMLLDQVGMA DQAHKLPSAI SGGQQQRVAI ARALANDPPI ILADEPTGNL DSKTAQQVFT LFEKLVDQGK TILMVTHDSD MARRVSRAVI IADGRIVNEY VAQALPALTL DQLGWVMRHA DIRTYAPGAV IIEQGSPADN FYIITRGDVE VFIEHPDGGE IIVNHLSTGS YFGEIGLLHQ GRRTAGVRAS FATGCDAAVL DQQEFHTLLA ESEATRNAIE RVARERHSRT QAATHDDM
|
| |