Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3058 |
Symbol | |
ID | 5210026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 3840593 |
End bp | 3841705 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640596650 |
Product | ABC-type sugar transport system periplasmic component-like protein |
Protein accession | YP_001277372 |
Protein GI | 148657167 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0062327 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTCGCC GATTCTTCGC ACTGTTCACA CTACTGATTG CAATTGCTTC ACTGATCGCA GCATGCGGCG GCGCTCCAAC AACGACCGCT CCGACCGCTG CACCGGCAGG GCAACCGACG GCGGCGCCGG AAGGCAAAAA ATTCACCATC GGCATCTCTA ACCCGTTCAT CAGCAGCGAA TACCGCACCC AGATGATCCA GTCGTTGATC GAGGTCAACA AGGAATACAT GGAGCGGGGT ATCACGAATG AACTCGTGAT CGAGAGCGCC GATACCGATG TCGCCGGTCA GATCCAGCAG TTGCAGAATC TGATCAACAA GGGCGTTGAT GCCATCCTGG TGAATCCCAG CGATGTCAAT GGTCTCAACG ACACCCTTCA GGAAGCCATC AACAAGGGGA TCATCGTCAT TTCCGTCGAT CAGGAACTCA ACACCCCCGG CGTCTACAAC GTCGGCATCG ACCAGAAAGA GTGGGCGAAG ATCTCCGCCC GCTGGCTGGC GGAGAAGTTG GGTGGTCAGG GAAACATCGT GCTGATCGAA GGCTTCCCCG GACACCCGGC GAACGTGGCG CGCATGGACG GCGTCGAGGA GGTGCTCAAG GAGTATCCGG GCATCAAGGT GCTGGGGCGT GAAACCGGGA AGTGGGACGA AGCGACCGGT CAGCAGGTGA TGTCAAACTT CCTGGCGTCG TTCCCTAACC TCGATGGCTA CTGGACTCAG GACGGCATGG CGATCGGCGC GATGCAGGCG GTGATGGCGG CGAACCCGCC GAAGTGGCCC ATCCTGGTTG GCGAAGGACG CTGCCAGTTC TTGCAGTTGT GGGATCAGCG CTTGAAGGAA GACCCCAACT TCGAGACGAT TGCTGTCGCC AATCCGCCCG GCGTCTCGCC GACCGGTCTG CGGATCGCCG TCAATATGCT GATGGGCAAG CAGGTGGATA AGAGTAAACT GGGAGGTGCG AACGGGTTGT CGTTCGTCAT TCCGGTGCCG GTGATCGTGA CGAAGGACAA CTTCCAGGAA GTCTTCACCA CTATGTGCAA GGACAAGCCG GCCACCTACC TGCTCGACGG CATTATGACC GACGAGGAAG TGCAGCAGTT CTTCCTGAAG TAA
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Protein sequence | MTRRFFALFT LLIAIASLIA ACGGAPTTTA PTAAPAGQPT AAPEGKKFTI GISNPFISSE YRTQMIQSLI EVNKEYMERG ITNELVIESA DTDVAGQIQQ LQNLINKGVD AILVNPSDVN GLNDTLQEAI NKGIIVISVD QELNTPGVYN VGIDQKEWAK ISARWLAEKL GGQGNIVLIE GFPGHPANVA RMDGVEEVLK EYPGIKVLGR ETGKWDEATG QQVMSNFLAS FPNLDGYWTQ DGMAIGAMQA VMAANPPKWP ILVGEGRCQF LQLWDQRLKE DPNFETIAVA NPPGVSPTGL RIAVNMLMGK QVDKSKLGGA NGLSFVIPVP VIVTKDNFQE VFTTMCKDKP ATYLLDGIMT DEEVQQFFLK
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