| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2984 |
|---|
| Symbol | |
|---|
| ID | 5209952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 3738394 |
|---|
| End bp | 3739830 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640596576 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_001277298 |
|---|
| Protein GI | 148657093 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAGGC GACGAACAAA ACTGATGCTC GGCATTGGCG CGCTCGCCGG TCTGTTGATC
GGCACAACCG GAACATCCTT TGCCCAGGAG ATCGATCCGG CGATTGCGGA AATGGGGGTT
GTCACCGATA CGATGTGGCT GCTGATCGCC GCCTTCCTGG TCTTTTTCAT GCAGGCGGGC
TTTGCGCTCG TCGAAGCCGG TTCCACGCAA TCCAAGAACA TGATCAACAT CATGTTCAAA
AACTTTATGG ACTTCTGTAT CGCTGCGCTG GCGTTCTGGA TGATCGGTTG GGGTATCGCC
TACGGCGCGA CGGTCGGCGG GTTCTTTGGA ACCGACCAGT TTTTCCTGGG AGATGTACGT
GAGGCGGGGA GCGTGCCGAC TCTTGCCCTC TGGCTGTTCC AGGTGGTGTT TGCGGGAACT
GCGGCGACGA TCGTGTCTGG CGCGATGGCG GAACGTACAA AGTTTGTTGC ATACCTGATC
TATAGTCTGG TTATCTCGAT CCTTATCTAC CCTGTCGTGG TCCACTGGGT ATGGAGCGGC
GCCGGCTGGC TCAATGACTA CGATCCGACC ACCACCGGCG ACTGGGGATT CACCGATTTC
GCCGGCTCGA CAGTGGTTCA CAGTGTTGGC GGTTGGGCGG CGCTGATGGG AGCATGGCTC
CTCGGTCCGC GCCTGGGGCG CTATGGTCCG GATGGCAAGC CGCGCGAAAT TCCCGGACAC
AGTGCAGCGC TCGCCGGTCT GGGGGTCTTT ATTCTCTGGC TGGGATGGTA TGGCTTCAAC
CCCGGCAGTC AGCTGGCGTT CAAAACCCAG GATGATGCCG ATGCGATTGC GCTGGTGGCT
GTGACGACCA CGCTTGCTGC GGCTGCGGGC GCGGTTGGCG CAATGATCAC AAGCTGGATC
AAGAGTGGCA AGCCGGAACT CGGCGCATCG CTGAACGGCG TGCTTTCGGG TCTGGTAGCG
ATTACCGCCG GTTGCGCCTA TATGCGTCCG ATTGATGCAG TGATCGTCGG TCTGGTCGCC
GGTCCGCTCT ACGTGATCTC GATGAAGTGG CTGGAGGCGC TGAAGATCGA CGACCCGGTC
GGCGCGGTGC CGGTGCACCT GGTGAACGGC GTCTGGGGGA CGCTGGCGGT CGGTCTGTTT
GCAACCATCG AAGGCAATAC CGGTACAGTC GGTCTGTTTG CTGGCGGCGG TCCGCAGTTG
CTGATCGCTC AGATCGTCGG CGTGCTGGCA ATCGGCGTCT GGAGTGCGTT GACCAGTTTC
CTGCTCTTCT TCATCATCAA GCGCACGATT GGTCTGCGCG TTTCGCCGGA AGAGGAAGAA
CTCGGTCTCG ATATCGGCGA GCACGGGACG GTCGCGTACC CGGATATCCA TAAGATGCCC
GAACCTGAGA CGATCCGCAC GATTACCGGG AAGCCAGCTT CCAGCACGGC TGAGTAA
|
|---|
| Protein sequence | MVRRRTKLML GIGALAGLLI GTTGTSFAQE IDPAIAEMGV VTDTMWLLIA AFLVFFMQAG
FALVEAGSTQ SKNMINIMFK NFMDFCIAAL AFWMIGWGIA YGATVGGFFG TDQFFLGDVR
EAGSVPTLAL WLFQVVFAGT AATIVSGAMA ERTKFVAYLI YSLVISILIY PVVVHWVWSG
AGWLNDYDPT TTGDWGFTDF AGSTVVHSVG GWAALMGAWL LGPRLGRYGP DGKPREIPGH
SAALAGLGVF ILWLGWYGFN PGSQLAFKTQ DDADAIALVA VTTTLAAAAG AVGAMITSWI
KSGKPELGAS LNGVLSGLVA ITAGCAYMRP IDAVIVGLVA GPLYVISMKW LEALKIDDPV
GAVPVHLVNG VWGTLAVGLF ATIEGNTGTV GLFAGGGPQL LIAQIVGVLA IGVWSALTSF
LLFFIIKRTI GLRVSPEEEE LGLDIGEHGT VAYPDIHKMP EPETIRTITG KPASSTAE
|
|---|
| |