| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2816 |
|---|
| Symbol | |
|---|
| ID | 5209785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 3509803 |
|---|
| End bp | 3510510 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640596415 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001277137 |
|---|
| Protein GI | 148656932 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00368325 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC TGCCACAACG CACCATGACC GAACAGGTTA TGGCGCGCCT GCGTGATATG
ATCCTGAGCG GCGAACTGGC GCCGGGGTCG CGTCTCGATC AGAACGACCT GGCGCGACGT
TTCGGCGTCA GCCTGGTGCC GCTGCGCGAG GCGCTGGCGC GCCTGCAATC GAGCGGGCTG
GTGCGCATCG TGCCGCATCG CGGCGTCTTT GTTGAGTCGT TGTCGGTTGA AGAACTGCTC
GATATCTACC AGGTGCGCGA GGCGCTTGAA GACCTTGCGT CCCGTCTCGC CGCGCCGCGC
CTGAGCGCCG CCGATCTGGC AACCCTTGAT CGATTGAAGA TTGAGATGGA ACAGACCGCA
AAGATAGACG ATTTCGAAGC CTTTCTCGAT CTGCACCGCG ACTTTCACTT CACTATCTAC
CGCGCCGCCG GGCGACGGCA TTTACTCCAG TTGCTCACGC AACTCTGGGA TTTGAGCGCG
CGCTACCGGC GGTTTCAGTT GTACGCCTTC CCGGAGCGGA TGCACACTTC CCTCTTCGAA
ATCCAGGCGA TCCTCGAGGC ATGTCACCGA CGCGACCCCG ATGCGCTGGC GTTGCTGGTG
CGCTACAAAG TGCATCAGAC GGTCGTCAGT CTGCTCGATA TCATACAGCG TGAACCAACA
CCAACAGTTG CGTCGATGGC CAACGGTAAA CATGTCGATG AACGATAA
|
|---|
| Protein sequence | MTDLPQRTMT EQVMARLRDM ILSGELAPGS RLDQNDLARR FGVSLVPLRE ALARLQSSGL
VRIVPHRGVF VESLSVEELL DIYQVREALE DLASRLAAPR LSAADLATLD RLKIEMEQTA
KIDDFEAFLD LHRDFHFTIY RAAGRRHLLQ LLTQLWDLSA RYRRFQLYAF PERMHTSLFE
IQAILEACHR RDPDALALLV RYKVHQTVVS LLDIIQREPT PTVASMANGK HVDER
|
|---|
| |