| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2597 |
|---|
| Symbol | |
|---|
| ID | 5209566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 3225786 |
|---|
| End bp | 3227282 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640596201 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_001276923 |
|---|
| Protein GI | 148656718 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.317944 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGTT CCCGCCTTCG CCAGATCATC AACCCGCTGG GCGCGCGTGC CGCTGCCGCA
TTTGAGGCGG CGCTGCGGCG CATTCCGGCG GTTCAGCGAC GGCTCGAAGC GCAGTATGCT
GCACTGCTTG CCGATATTGA ACCATCGCTC AAACCATACC GCCACGAATT TCCGGCATAT
ACCCGCCTCC CGCCGGTCGG ACGCAACCGC GATGATATCC TTGCCATGAT GCGCCAGCTT
GCCGAACGCG AAACACCGCG CTGGCGCGAC GGGTATGTGT CGGGCGCGGT GTACCACGGC
GATCCCGATC ACCTTGCGTT TCTGAATCAG GCGTATGCGC TCCATTCCGT AAGCAATCCG
CTACACGTCG ATCTCTGGCC CAGCATTGCG CGATACGAGG CGGAGATTGT TGCAATGACG
GCGACCATGC TCGGCGGCGG ACCGGGCGTG TGCGGCACCG TCACTTCCGG CGGCACCGAG
AGCATTCTGC TCGCCATGAA GACCTACCGC GATTGGGCGC GTGAACGTCT GGGCATTCGC
CATCCCGAAG TGGTTGCGCC GGTCACCGCG CACGCAGCGT TCGACAAAGC TGCACACTAC
TTTGGCATCC GATTGGTGCG CATCCCGGTT GATGACGGCT TCCGCGCCGA CGTTGCCGCC
GCGCGCCGCG CTCTGACCCG CAACACGATT GCCCTGGTCG GTTCAGCGCC CTCATTCCCG
CACGGTGTTA TTGACCCGAT TGCCGATCTT GCGGCGCTGG CGCATGATCG ACGCATTGGC
ATACACGTCG ATGCCTGCCT GGGCGGGTTT GTGCTCCCCT GGGCGCAGCG TCTCGGCTAT
CCGGTTCCGC CGTTCGACTT CAACGTCCCC GGAGTAACTT CCATCTCGGT TGATACACAC
AAATACGGGT ATGCGCCCAA AGGAACCTCT GTCATTCTCT ACCGCACCGA AGCATTGCGA
CGCTTCCAGT ACTATGTCGC CGCCGACTGG CCCGGCGGGC TGTACGTTTC ACCAACGATG
GCGGGCAGTC GTCCTGGCGC ACTGAGCGCT GCTGCGTGGG CGGCGATGGT CAGCATGGGG
GAACAGGGGT ATCTGGAAGC AACGCGGCGC ATCCTGGAAA CAGCGCATCG GATCCGCACC
GGCATCGAGG CGATCCCGGA ACTCCGCATT CTCGGCGATC CGCTCTGGGT GATCGCCTTC
ACAGCGACGC GCCTGGACAT CTACCGCATC CTTGACCGGA TGGCGCAACG CGGCTGGAAC
CTCAACGGAC TGCACCATCC TCCAGCAGTC CACATCTGCG TCACCCTGCC ACACACTGCG
CCCGGCGTCG CCGACCGATT CATCGCCGAC CTGCGCGACT CGGTCGCTGC CGTTCGCCGT
GAACCGCGCG CCAGAGGGGG AATGGCGCCG GTGTACGGCA TGGCTGCATC ACTGCCGTTC
CGTGGCGTCA TCGGCGACCT GCTGCGGCGC TATCTCGACG TGGTGTACAA ACCGTAG
|
|---|
| Protein sequence | MARSRLRQII NPLGARAAAA FEAALRRIPA VQRRLEAQYA ALLADIEPSL KPYRHEFPAY
TRLPPVGRNR DDILAMMRQL AERETPRWRD GYVSGAVYHG DPDHLAFLNQ AYALHSVSNP
LHVDLWPSIA RYEAEIVAMT ATMLGGGPGV CGTVTSGGTE SILLAMKTYR DWARERLGIR
HPEVVAPVTA HAAFDKAAHY FGIRLVRIPV DDGFRADVAA ARRALTRNTI ALVGSAPSFP
HGVIDPIADL AALAHDRRIG IHVDACLGGF VLPWAQRLGY PVPPFDFNVP GVTSISVDTH
KYGYAPKGTS VILYRTEALR RFQYYVAADW PGGLYVSPTM AGSRPGALSA AAWAAMVSMG
EQGYLEATRR ILETAHRIRT GIEAIPELRI LGDPLWVIAF TATRLDIYRI LDRMAQRGWN
LNGLHHPPAV HICVTLPHTA PGVADRFIAD LRDSVAAVRR EPRARGGMAP VYGMAASLPF
RGVIGDLLRR YLDVVYKP
|
|---|
| |