Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_2431 |
Symbol | |
ID | 5209400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 3004717 |
End bp | 3005457 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640596036 |
Product | ABC transporter related |
Protein accession | YP_001276758 |
Protein GI | 148656553 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000823093 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000192607 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCACGCTG AACCACTGAT AATTCTTGAT CGCGTCTCGA AGAGTTATGA AGAAGCCGGA CGCGAGCGCT TCGTGCTGCG TGATGTCAGC GCCTCGTTCG CGCGCGGCGA GTTCGTGGTG CTGGTCGGCA AGAGTGGAAC GGGCAAAAGT ACGCTCCTGA ACCTGATCAG TGGCATCGAT ACGCCGACCT CCGGTGAGAT CATTGTGAAT GGTCAATCGT TGACTCGCCT GCCGGAACGT GAACGAACGC TGTTCCGGCG CCGCTCGATA GGCTTCATCT TTCAGTTCTA CAACCTGACG CCGACATTGA CGGTGCTGGA GAATCTGCTC CTGCCGCTCG AGTTGAACGG TCGGGTAACG GCGCGCGACC GCGCGGCTGC GCTCGATCTG CTGGCGCAGG TTGGGCTTGC CGATCGCCGG AATGCTTACC CCGACCGTCT TTCTGGTGGA GAACAGCAAC GGGTGGCGGT TGCGCGCGCG CTGGTGCACG ATCCGCTGCT GGTACTGGCG GATGAGCCGA CCGGGAACCT CGATAGCGAG ACCAGTCAGC AGGTGCTCGA TCTGCTCGAT ACCCTCACCC GCCGCGCCGG GAAAAATCTC GTGATGGTCA CCCACAGCCC TGAGGTGGTC GGTCTGGCGG ATCGCCTGTT CCGGATCGTC GAAGGGCATC TGATTGAAGA ACAGGCGCCG GTAGCGCGTT CGCTTTCCTC ATCCTCCCTG CATCCTTCCT CTCACGTGTA G
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Protein sequence | MHAEPLIILD RVSKSYEEAG RERFVLRDVS ASFARGEFVV LVGKSGTGKS TLLNLISGID TPTSGEIIVN GQSLTRLPER ERTLFRRRSI GFIFQFYNLT PTLTVLENLL LPLELNGRVT ARDRAAALDL LAQVGLADRR NAYPDRLSGG EQQRVAVARA LVHDPLLVLA DEPTGNLDSE TSQQVLDLLD TLTRRAGKNL VMVTHSPEVV GLADRLFRIV EGHLIEEQAP VARSLSSSSL HPSSHV
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