| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2411 |
|---|
| Symbol | |
|---|
| ID | 5209380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2981841 |
|---|
| End bp | 2982422 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640596016 |
|---|
| Product | sigma 54 modulation protein/ribosomal protein S30EA |
|---|
| Protein accession | YP_001276738 |
|---|
| Protein GI | 148656533 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
|---|
| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00273718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTGA TCGTGAAAAG CCGCAATGGC AAAATCTCGG AGCGTCAGCG TCAACACATT
GAGCAAAAAC TCTCACGTCT CGACCGGTAT CTCGACCGGA TCGCTCAGGT GACGGTCGAG
CACATGGAAG AAATGCGGCG CAACGAGGGG AATGTCCATC GCGTGCAGGT GACGGTTGTT
GGTGATCATG GCGTTCTGGT GCGCGCCGAG CGACGGGCGC CGGAACTCTA CGCCGCGATC
GATGAGGTGT ATGATACGCT CCAGCGTCAG ATCGAGCGCT ACAAGGATAA ACACTGGCGG
CGAGGAAAAC TGCGCCGTCA GGGCGGGCAG ATTGTCGAGG CGCTGCCCGA ACTGGCCGCT
CCCTCGCTCG CCGACACCCA GGAAGAGGAG GAGCGACCTC GCATCGTCCG CACGAAGGAG
TTCCAGGTCA AACCGATGTA CAGTGACGAA GCGGTAGAGC AGATGGAACT GCTGGGCCAC
AACTTCTTCA TCTTCCAGGA TGCGGACACT GGCAAACTGA ATGTGCTCTA CCGCCGCCAG
GATGGCAATT ATGGTCTGAT CGTGCCAGAA GTCAGCAGTT GA
|
|---|
| Protein sequence | MDLIVKSRNG KISERQRQHI EQKLSRLDRY LDRIAQVTVE HMEEMRRNEG NVHRVQVTVV
GDHGVLVRAE RRAPELYAAI DEVYDTLQRQ IERYKDKHWR RGKLRRQGGQ IVEALPELAA
PSLADTQEEE ERPRIVRTKE FQVKPMYSDE AVEQMELLGH NFFIFQDADT GKLNVLYRRQ
DGNYGLIVPE VSS
|
|---|
| |