| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2406 |
|---|
| Symbol | |
|---|
| ID | 5209375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 2978092 |
|---|
| End bp | 2978736 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640596011 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_001276733 |
|---|
| Protein GI | 148656528 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.716891 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCTGA TCGTCGTCGG ATGCGGTCGC GTTGGATGTC TGCTGGCGCA GCAGATGGTC
GCCGAAGGGC ATTCAGTTTC GGTCATCGAT AAGAATCCGC AAGCGTTCAA GCGCCTCGGG
CGTGAGTTCC GCGGGCAAAC CGTGCTGGGC GTCGGGTTCG ATCGCGATAC GCTGCGTGAG
GCGGGCGTTG AGCGCGCTGA TGCGCTTGCA GCCGTAACCA ACGGCGACAA TTCGAATTAC
ATTACCGCAA CCGTCGCCCG TGATGTCTTT CGTGTGCCGA ATGTGGTAGC GCGCATTTAC
GATCCTCAGC GTGAGGCGAT CTACCGCGAG CTGGGCATTC GCACCATCAG TTCGACAAGT
TGGGCCGTCC ATACGATCCG CCGGATCCTG CATGGTGATG AGACCGTGTC GTCGATCCAG
TTTGGCAGCG GTGAGGTGGA GATCGCAGAG GTGACCATTA CCGGACGGTT GGTAGGGCAT
TTTGTGCGCG ATCTGTCGGT GCCGGGTGAA ATGATGCCGG TTGCCATTGT GCGGCGCGGG
CGTGCTTTTC TGCCTACGCC AGGAGTATTG CTCGAAGAAG GGGATGTCGT GCATATTGCA
GTTCTGGCGA CAGCAACGAG CCTGCTCGAA TCGATGATTC AGTGA
|
|---|
| Protein sequence | MHLIVVGCGR VGCLLAQQMV AEGHSVSVID KNPQAFKRLG REFRGQTVLG VGFDRDTLRE
AGVERADALA AVTNGDNSNY ITATVARDVF RVPNVVARIY DPQREAIYRE LGIRTISSTS
WAVHTIRRIL HGDETVSSIQ FGSGEVEIAE VTITGRLVGH FVRDLSVPGE MMPVAIVRRG
RAFLPTPGVL LEEGDVVHIA VLATATSLLE SMIQ
|
|---|
| |