| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2180 |
|---|
| Symbol | |
|---|
| ID | 5209143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2684088 |
|---|
| End bp | 2685521 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640595782 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001276510 |
|---|
| Protein GI | 148656305 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCA AGTGGTGGGC GCTGCTGGCG GTGGCGACTG GCGTGTTCAT GAGTACGATC
GATGGCTCGA TCGTCAACAT TGCACTCAAA ACGTTGCAGG AGTCGTTTGG CGCCGGATTG
CACGAAGTCG AATGGGTGGT GCTGGCATAT TTGCTGGGAA TTACCTGTTT GCTGCCGGGT
ATGGGGCGTC TGGGCGATAT GATCGGCAAA CGGAGCGTCT ACCTGATCGG TTTCGTCGTG
TTCACCATCA GTTCGGCGTT GTGTGGTCTG GCGTGGAGCA TCGGCGCACT GGTCGGGTTT
CGCGTGTTGC AGGCAATCGG CGCTGCAATG ATCCAGGGCG TTGGCGCGGC GCTGCTGGTG
GAAGCTTTCC CGCCCTCTCA ACGTGGACAG GCGCTCGGTT ATATCGGCAC GGCGGTTGCT
GCCGGCATCC TGACCGGTCC AGTGCTGGGC GGCGCGCTGA TCGATGCAGT TGGGTGGCAG
GCGATCTTTT TCGTCAATAT CCCAATCGGC ATTGCCGCAA TTGCGTTGAT ATTGTACGCG
CTTCCCTCCG ACCGCACGCA TACCACGCAA CGGTTCGATC TGGTCGGCGC AGCGCTGCTG
GGTATCGGGC TGCTGCTCGT GCTGCTGGCA TTGACCGAGG GGCAGGTCTG GGGCTTCGAT
GACTGGCGCA CACTGGCGGC GCTGGGAAGC GGCAGCGCGT TGCTGGTCTG TTTTGTGTGG
TGGGAATATC GCGCGTCGGC GCCGATGATC GACCTCCGCC TCTTTCGCAC GCCAGCCTTC
AGTTTCAGTT TGATGGCAGC CTTTCTGATC TTTCTGGCAG GCGCTTTCAA TTTCCTTCTG
ATCCCCTACT ATCTGCAAAA GGCGCTCGGA TATTCGCCGC AAACAACCGG ATTGACCCTG
ATCGCTTCAC CGCTGATCCT GTCCCTCGTA TCGCCGATCA GCGGGCGATT GTCGGATCGG
TTCGGCGCGC GCTGGTTGGG GATCATCGGT CTGACGCTGA CTGCTGCCGG TTTGTTGAGT
ATGGCAACCC TCACGACCGA CAGTTCACAA ATGGATGTGG TGCTGCGCCT GATGCTGATC
GGCGCCGGTT TCGGTCTGTT CCAATCGCCG AACAACAGTC TGATCATGGG AAGCGTTGCG
CGGGCGAACC TGGGCGTTGC GGGAAGCCTG CTGGCGGTTA TGCGCACGCT TGGGCAGACA
ACCGGGGTTG CGATTGCCGG AGCGATCTGG GCAATACGGG TAACTGCGGC AGCCGGACAG
CAGTACGAAC CGATCACCGC CGCTCCGCCG TTTGCGCTGG TCGCCGGTAT GCACGATGCC
ATGCTGGTCG CAGCGTTCCT GGCGGCGCTG GCGATTGTGC CGACACTGGT GCGTGGGCAA
CACTCCGGGG AGCAGCAGCG TGACGTGGTG CGCCCGGTGA AGGTGGAAGG GTGA
|
|---|
| Protein sequence | MERKWWALLA VATGVFMSTI DGSIVNIALK TLQESFGAGL HEVEWVVLAY LLGITCLLPG
MGRLGDMIGK RSVYLIGFVV FTISSALCGL AWSIGALVGF RVLQAIGAAM IQGVGAALLV
EAFPPSQRGQ ALGYIGTAVA AGILTGPVLG GALIDAVGWQ AIFFVNIPIG IAAIALILYA
LPSDRTHTTQ RFDLVGAALL GIGLLLVLLA LTEGQVWGFD DWRTLAALGS GSALLVCFVW
WEYRASAPMI DLRLFRTPAF SFSLMAAFLI FLAGAFNFLL IPYYLQKALG YSPQTTGLTL
IASPLILSLV SPISGRLSDR FGARWLGIIG LTLTAAGLLS MATLTTDSSQ MDVVLRLMLI
GAGFGLFQSP NNSLIMGSVA RANLGVAGSL LAVMRTLGQT TGVAIAGAIW AIRVTAAAGQ
QYEPITAAPP FALVAGMHDA MLVAAFLAAL AIVPTLVRGQ HSGEQQRDVV RPVKVEG
|
|---|
| |