| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2104 |
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| Symbol | |
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| ID | 5209066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 2597304 |
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| End bp | 2598929 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640595706 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001276435 |
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| Protein GI | 148656230 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCCAC GTGCACGAAT AATCATTCTG CTCGTCCTGG TCGCCGTGCT CATCGGCGGT
GGCTACTGGT TGTTGCAGGA ATCGGCGCAG GCGAGGAACG GAACCCTGAC CGGCACGGGA
ACGATTGAAG CGGAAGAAGT GCTGGTGACG GCCGAGATCG CCGGACGTGT GCAGCATCTC
TTCGTCGATG AAGGGTCGGA GGTGCGGATC GGGGAGGATC TGGCGCAGAT CGACACTGCA
TTGCTCGAGG CGCAACTGGA TCAGGCGAAG GCGGCGGTTG CAGCAGCCGA GGCGAACCTG
GCGCAGATCC GTGCCGGAAC CCGCAGCGAG GAGATTGCCA TCGCTGAGGC GCAGGTCAAA
CAGGCGGAGG CGGCAGCAAG AGGGGCGGAG CAGGCGTATG AGCATGCACT GGAGATTCTG
AACAATCCGC AGGAACTGGA ATTGCAACTG GTGCAGGCGC GCGCGCAACG TGATGCGGCG
CTGCGAACGC TGGAAAAACT GCGCGCTGGC GTCCGCCAGG AAGATATCGA TGCTGCGCGC
GCATCGATGC ACCTGGCACA GGAAGGGTTA CAATCCGCCC GCGACCGCCT CTCCGCTGCG
AAAACGCTGG CGGAGGCGCA GGTGGAACAG GCTGCGGCAG CGTTGACCCA GGCGCAGGCG
CGGTATGCGC AGGCGAAGAC CAACTGGGAG TATGTGCGCG ATACGGGTCA GGATGCGTTG
ATGCCGACCG TGCTGGTCAC ACTGCCGACC GGTGTGCAAC GTCTGCCGAA TACCGTAAGT
GACGGGGTGC GCGAACAGTA CTATGCGCAA TTCGTTCAGG CGGAAGCCGC GCTGCGCCAG
GCGGAGACGG CGCTCGAACA GGCGTTGGTG CAGGCGGAAG AGGCGCGCCA GGCAGAGGCG
GTCGGCGTGC GCCAGGCGGA GTTGCAGGTG AGTATCGCAC AGGCGACGCT GGCAAAAGCG
GAAGCAGGAC CGACCCGTCA GGAGATTGCT GCTGCCGAGA CTGCACTCGC AAATGCGCAG
CGGTTGCTCG ACGTGGTCGA AGCAATGCGC GCCAATCCGC AGCAATTGCG CGCTGCCGTT
GATGCTGCGC GCACGCAGCA AGCGATTGCA GAAGCGCAAC TGGCGCAGGC GCGGGCGCGG
CTTGATCTGG CGCGCAATGG CGCGCGTCCA GAGCAGATCC AGGCGGCGGA AGCGCAACTG
GCGCAGGCGC GGGCATCCCT GCATCAGGTG GAGGTGATGA TCGACAAGGC AAGGTTGCGC
GCACCGCGCA CCGGCATCGT CCTGAGCCGC CCGATCCACG AAGGAGAGCA GGTGACCCCC
GGCACGCCGT TAATGACCAT CGGCGCCCTC GATCCCGTGC GCCTGACGGT GTACATCAGC
GAGGCGGATA TCGGGCGTGT GCGTCTCGGT CAGGCGGCAG AGGTCACAGT GGACAGTTTT
CCAGGTCGAG TCTTTCATGG TACAGTAACA TTCATTGCCC AAAGAGCGGA ATTTACGCCG
CGGAACGTGC AGACGCGCGA TGAGCGCGCA ACGACGGTGT TCGCGGTACG GATTGAGTTG
CCGAATGCTG ACTACGCCCT CAAGCCGGGG ATGCCAGCGG ATGTTGTGCT GGTGGAGAAG
GACTGA
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| Protein sequence | MHPRARIIIL LVLVAVLIGG GYWLLQESAQ ARNGTLTGTG TIEAEEVLVT AEIAGRVQHL
FVDEGSEVRI GEDLAQIDTA LLEAQLDQAK AAVAAAEANL AQIRAGTRSE EIAIAEAQVK
QAEAAARGAE QAYEHALEIL NNPQELELQL VQARAQRDAA LRTLEKLRAG VRQEDIDAAR
ASMHLAQEGL QSARDRLSAA KTLAEAQVEQ AAAALTQAQA RYAQAKTNWE YVRDTGQDAL
MPTVLVTLPT GVQRLPNTVS DGVREQYYAQ FVQAEAALRQ AETALEQALV QAEEARQAEA
VGVRQAELQV SIAQATLAKA EAGPTRQEIA AAETALANAQ RLLDVVEAMR ANPQQLRAAV
DAARTQQAIA EAQLAQARAR LDLARNGARP EQIQAAEAQL AQARASLHQV EVMIDKARLR
APRTGIVLSR PIHEGEQVTP GTPLMTIGAL DPVRLTVYIS EADIGRVRLG QAAEVTVDSF
PGRVFHGTVT FIAQRAEFTP RNVQTRDERA TTVFAVRIEL PNADYALKPG MPADVVLVEK
D
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