| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2003 |
|---|
| Symbol | |
|---|
| ID | 5208965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2481930 |
|---|
| End bp | 2483882 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640595610 |
|---|
| Product | acetate--CoA ligase |
|---|
| Protein accession | YP_001276339 |
|---|
| Protein GI | 148656134 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02188] acetate--CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.807811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00673553 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATCG ATGTAGCCTC GCCAAAGACG ATCACACAGT TCGAGGACGA ACAGGGTATC
TACCATCCTG CGCCGCACAT CGTCGAGAAC GCAAATATCA CAGCGTATAT GCGCTCGAAA
GGCTTCTCGA CCTGGGAGGA GTTGTACCAG TGGTCGATTG AATATCCAGA ACTCTTCTGG
ACCGACATGG CGAACCGCCT GGAGTGGTAT CAACCATGGG AAAAGGTGCT GGACGACTCG
AACAAACCGT TCTACAAATG GTTCGTCGGT GGAAAGATCA ACATCGTTCA CAATGCCATC
GACCGCCATC TGAGAACGGC GCGGCGCAAC AAACAGGCGC TGATCTGGGA AGGTGAGGAC
GGGAGTTATC GCGCTTTCTC GTACTTCGGC ATCAACCGCG AGGTGTCAAA GTTTGCGAAT
GTGCTGAAGA GCATGGGGGT GCAGCAGGGC GACATTGTTT CGATCTACAT GCCGCGTGTG
CCCGAACTGG TCTTCGCCAT GTTGGCGTGC GCCAAGATCG GCGCGGCGCA CTCAGTGATC
TACGGCGGCT TCTCGGTCGA AGCGCTCCGC GAACGCATCG CCGATGCCCA GTCGAAGGTG
CTGATCACCG CCGACGGCGG CTATATGCGC GGAAAGATCG TCGAACTGAA GAAGATCGCC
GATGAAGCGA TGAGCCACAG TCCGTCGATC CAGACCTGCA TCGTGCTGCG GCGCACGGGC
CACGAGGTCG AGATGCAGGC AGGACGCGAC TACTGGTGGC ATGATCTCAT GAACCTGCCG
ATCGCGTCGC CCAAATGCGA GACGGTTCCG GTCGATGCGG AACACCCGCT CTATATTCTG
TACACCTCCG GCAGCACCGG TAAACCCAAA GGGGTCATGC ATGTCCACGG CGGCTACGCC
GTTCACGTTT CTGCAACCCT GCACTTCACG TTCGACATCA AAGAAGAAGA CCGCTACTGG
TGCGCCGCCG ATCCGGGGTG GGTCACCGGT CACTCGTACA TTGTCTACGG TCCACTGATC
GAAGGTGCAA CCTCGTTCAT GTACGAAGGC GCGCCCAACT ACCCCTATCC GAACCGCTGG
TGGAGCCTGG TTGAGAAGTA TGGCATCAAT ATCCTCTACA CTGCGCCAAC CGCCATCCGT
GGTCTGATGC GCTTCGGTGA CGCCTGGCCC AACCGCCACG ATCTCTCAAG CCTGCGCCTG
CTCGGTTCGG TTGGCGAGCC GATCAACCCT GAAGCATGGC GCTGGTTCTA TCAGGTCATC
GGCAAGGAAC GCTGCCCGAT CATGGACACC TGGTGGCAAA CTGAAACCGG CGGCTTCCTG
ATCACGCCCA ACCCGACAAC GCCGCTGAAA CCGGGATCGG CGACGCGTCC GTTCCCCGGC
ATTCAGGCTG ACGTGGTCGA TGAGCAGGGA CGCAGCAAGG CGCCGAACGA AGACGGGTTG
CTGGTGATCA AGTCACCCTG GCCCGGCATG ATGCGCACCA TCCTGCGCGA CCCGGATCGG
TACGTCAATC AGTATTGGAA CAGCGATCCG CCCGGCATGT ACACCGCCGG CGACTCGGCG
CGCAAGGATG AGGACGGCTA CTTCTGGATC ATCGGGCGCA TCGACGACGT GATCAAGGTA
TCGGGGTATC GCCTGGGCAC GGCGGAGATC GAGAGTGCGC TGGTGTCGCA TCCCGCCGTG
TCGGAAGCGG CTGCCATCGG CCTTCCCCAC GAGGTGAAGG GCACCGCGAT CCACTGCTTC
GTCATTCTGC GCGCTGGCAT CGAGGGGACG CCTGCGCTCG AAGATGAACT CAAGGCGCAC
GTTGCGCGCG AGATGGGACC CATCGCCCGC CCGGAGAGCA TCAAGTTCGT CTCGATCCTC
CCCAAGACGC GGTCGGGCAA GATCATGCGG CGCGTGCTCA AGGCGCAGGC ACTGGGGCAG
GACCCTGGCG ACCTGTCAAC TCTGGAAGGA TAG
|
|---|
| Protein sequence | MSIDVASPKT ITQFEDEQGI YHPAPHIVEN ANITAYMRSK GFSTWEELYQ WSIEYPELFW
TDMANRLEWY QPWEKVLDDS NKPFYKWFVG GKINIVHNAI DRHLRTARRN KQALIWEGED
GSYRAFSYFG INREVSKFAN VLKSMGVQQG DIVSIYMPRV PELVFAMLAC AKIGAAHSVI
YGGFSVEALR ERIADAQSKV LITADGGYMR GKIVELKKIA DEAMSHSPSI QTCIVLRRTG
HEVEMQAGRD YWWHDLMNLP IASPKCETVP VDAEHPLYIL YTSGSTGKPK GVMHVHGGYA
VHVSATLHFT FDIKEEDRYW CAADPGWVTG HSYIVYGPLI EGATSFMYEG APNYPYPNRW
WSLVEKYGIN ILYTAPTAIR GLMRFGDAWP NRHDLSSLRL LGSVGEPINP EAWRWFYQVI
GKERCPIMDT WWQTETGGFL ITPNPTTPLK PGSATRPFPG IQADVVDEQG RSKAPNEDGL
LVIKSPWPGM MRTILRDPDR YVNQYWNSDP PGMYTAGDSA RKDEDGYFWI IGRIDDVIKV
SGYRLGTAEI ESALVSHPAV SEAAAIGLPH EVKGTAIHCF VILRAGIEGT PALEDELKAH
VAREMGPIAR PESIKFVSIL PKTRSGKIMR RVLKAQALGQ DPGDLSTLEG
|
|---|
| |