| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1998 |
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| Symbol | |
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| ID | 5208960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 2476726 |
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| End bp | 2478537 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640595605 |
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| Product | pepF/M3 family oligoendopeptidase |
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| Protein accession | YP_001276334 |
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| Protein GI | 148656129 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0556432 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTAT CAGTCAGTGA ACCACTGCCT CATTGGGATA TGACGGTCGT CTATCCCGCG
CTCGATTCGC CGGAGTTCAA CCACGACCTT ACGGCGACAC GTCAGGCGTT CGACACGATG
ACCTCGCTGT TCGACCGTCT GGGAATTAAC AGGCGCGACC GGCAATCGAC CGATGACGCT
GCTGTCGCCG CATTCGAAAC GGTTGTTCCG GCGCTGAACG AACTGCTCGA ACAGTTCTCC
ACCCAGCGCG CCTATGTCTA CAGTTTCGTG GCAACCGACT CACGGAACGA TCAGGCGCAG
GCAACGTTCA GCATGCTGAT GCGGGAAGGG GTTCGGCTAA CAAAACTGTT GCGGCGATTG
ACCGCCTGGC TTGGCGGGTT GGATGTCGAA ACGTTGATCC AGCGCTCGAC TATCGCGCGT
GATCACGCCT ATCTGGTGCG CCGCGCCGCC GAAGAGGCGC GTCACCTGAT GTCGCCTGCC
GAAGAGGAAC TTGCCGCAGA ACTGGACCTG TCGGGCGGTA TTGCCTGGGC ACGTATGTAC
CAGAATCTGA CGTCGCAGAT ACTTGTGCCC ATCGAACGCG AGGGGCAGAC AGTCGAACTG
CCGATGAGTC AGGTGCGCAA TCTGGCGCGC GACCCGGACC GGGCAGTGCG CCGCAGCGCG
CACGAGGCGG AACTCGCAGC CTGGGAACGC GCAGCGTTGC CGCTCGCATC CGCGCTCAAC
AGCATCAAAG GGCAGGTGCT CACCCTCAGT CGCCGTCGTC GGTGGGAATC GCCGCTCGAG
GCATCGCTGT TCGACAATGG CATCGACCGC GCCACGCTCG ATGCCATGAT GACCACAGCG
CGCGAGTTCT TTCCCGATTT TCGGCGCTAC CTGCGCGCCA AAGCCAGGCT CCTCGGTCTT
GAACGCCTCG CCTGGTACGA TCTCTTCGCC CCGGTCGGCA GCGGTGGACG CAGCTGGCGC
TTCAGCGATG CAGAGGCGTT TATCGTGGCG CAGTTCACGC GCTACTCGAC GCGCATGGGC
GATTTTGCTG CGCGCGCATT CCGCGAACGC TGGATCGACG CCGAACCGCG CGCAGGAAAA
GTCGGCGGCG CGTTCTGTAT GTCGCTCCGC CGCGATGAGT CGCGCATTCT GCTGAACCAC
GATCCCACAG CGGACAGCAT GTTTACGCTG GCGCACGAAC TCGGGCATGG CTACCACAAC
CTCAACCTGG CGCAGCAGAC GATGCTCAAC CGTGATACGC CGATGACCCT GGCAGAAACG
GCGAGCATTT TCTGTGAGAC GATTGTGCGC AATGCGGCGC TCCAGGACGC CAGCCGCGAT
GAGACGCTCG AAATCCTCGA GGCGTTCCTC AGCGGCGCGT GTCAGGTGGT GGTTGATATT
ACGTCACGCT TCCTGTTTGA AACCGCGCTG TTCGAACAAC GCGCCACGCG CGATCTGTCG
GTCGCCGAGT TGTGCGTGCT GATGATCGAC GCGCAGAAAC AAACGTATGG CGATGCGCTC
GATGAACAAA CATTGCATCC ATTTATGTGG GCGGTCAAGG GGCACTACTA CAGCAGCGGC
TTTTCCTTCT ACAATTACCC TTACATGTTC GGCTTGCTGT TCGGGTTGGG GCTGTATGCC
GCCTATCAGC GTGCGCCCGA CGCTTTTCAG GCGCGCTACG ACGATCTGCT GGCTTCGACC
GGGCTGGCAA GCCCGCTCGA ACTGGCAGCG CGCATGGAGA TCGATCTGCG CTCACCCGCA
TTCTGGCGCG CCAGTCTCGA GGTCATTCGC TACGATATTG ATCGCTTCGA GTCGCTGGCA
GTTGCGACAT GA
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| Protein sequence | MTLSVSEPLP HWDMTVVYPA LDSPEFNHDL TATRQAFDTM TSLFDRLGIN RRDRQSTDDA
AVAAFETVVP ALNELLEQFS TQRAYVYSFV ATDSRNDQAQ ATFSMLMREG VRLTKLLRRL
TAWLGGLDVE TLIQRSTIAR DHAYLVRRAA EEARHLMSPA EEELAAELDL SGGIAWARMY
QNLTSQILVP IEREGQTVEL PMSQVRNLAR DPDRAVRRSA HEAELAAWER AALPLASALN
SIKGQVLTLS RRRRWESPLE ASLFDNGIDR ATLDAMMTTA REFFPDFRRY LRAKARLLGL
ERLAWYDLFA PVGSGGRSWR FSDAEAFIVA QFTRYSTRMG DFAARAFRER WIDAEPRAGK
VGGAFCMSLR RDESRILLNH DPTADSMFTL AHELGHGYHN LNLAQQTMLN RDTPMTLAET
ASIFCETIVR NAALQDASRD ETLEILEAFL SGACQVVVDI TSRFLFETAL FEQRATRDLS
VAELCVLMID AQKQTYGDAL DEQTLHPFMW AVKGHYYSSG FSFYNYPYMF GLLFGLGLYA
AYQRAPDAFQ ARYDDLLAST GLASPLELAA RMEIDLRSPA FWRASLEVIR YDIDRFESLA
VAT
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