Gene RoseRS_1618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_1618 
Symbol 
ID5208573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp1983080 
End bp1985215 
Gene Length2136 bp 
Protein Length711 aa 
Translation table11 
GC content60% 
IMG OID640595224 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_001275960 
Protein GI148655755 
COG category[T] Signal transduction mechanisms 
COG ID[COG2203] FOG: GAF domain
[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.491163 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCTC AGGTTCCGAC AAATCAGATG TATGACATCG TCGAATGGAC CTCCAGCGAT 
GATCCGCTTC TGGAGAGTCT GGGACGGATC GCACAATCGG TTGAGCGCGC CACGACTCTC
GACCAACTGC TGCACCTCTC ACTGATCGAG TTGACCCGTC TCTGCCGCGC GGATCGTGCG
ATTGCGCTAC TGAAGGACGT TCAGGGGCGG GCAGTATGGG TCTGTGAATA TCCTCAATCC
GGCGATGCCC CTGAGTTGAC GCTGGACGCT ATATCGGGCG CTGCGGACGC AATGCGACTG
CGGCGCCCGA TAATTGTGCA TCCCCAAGAA CAGGCATTGC TGGCGCGCGA CGTTCGGGTG
CTGCTGGTCG CGCCGCTGAT CGCCCGTGAC GAAACGCTTG GCGCTCTGGC TATCTGTAGC
GCTCATGCCA CGCGGACATT CGATAGCAAG GATGTGGCGC TCATCAGGGC GCTGAGCGGG
CAGATCGCGC TGGTAATCAT GTCGCACCGC AGTTGCGAAT CGGTCGAGCG ACGCACGCAA
GAACTCAAAA CCCTCAACGA TATTGCGTCA GTTGTCACAT CGACGCTCGA TACCCGTGAA
GTGTACCGCC TGGTCGTCCA GCAACTCAGC GATTATTTTC ACGTCGAAGC CGGTTCGTTA
CTGCTCGTTG ATGAAGCGAC CGGCGACCTC GAGTTTGTGA TGACCATCGA AGGCGGCGAA
GAAAAGCTTG CCGGTTTTCG CGTTCCGGCT GGACAGGGTG TTGTCGGGCA TGTGGTGCGC
ACCGGTCGAT GGGAGATCGT GCACGATGTC AGCCGCGATC CGCGCTTCTA TCGCCAGATT
AGCGAGGCGA CCGGTTTTTC GACGCGCTCG ATCCTGTGTG TGCCGATGAT TGCCAAGGGG
CGGGTCATCG GCGCCATCGA ACTGCTGAAC AAGATCGGCG GGGATTTCGA CGAAGAGGAT
GCGCTGCGGT TGATGCGCAT GGCTGCGTTC ATTGCGGTTG CCATCGAGAA TGCCCGCCTG
TTCCAACAGG TGACTGCGGG GCGTGATCGC ATGGCATCCG TGCTTCGCTC AACTGCCGAT
GGCATTCTGA TGGCCGATAT GCGCGGCGAG ATACAGATCG CCAATCCGCT GGCGGTTGAG
ATTTGCGGAT GTCCAGAAGA GTCGTTGATC GGCCGGCGGA TCGACGATGT CGTGGCGGAA
TTGTATGCGC GCGCCCACGA CATCACGACC CCATCGTGGA GCCAGGAGGT TGCGGTACCG
GCGCAGATCA GCGATCTGGC GTTTGCGAGC GGAGCGCACC GGTATGTGCG CCTGATCCGT
CTCCCTGTCT ACGATGCCCA GAATGAGCCG CGCGGCGAGT TGCTGATCCT TCGCGATATT
ACGCAGGAAC GCGATCTGGA ACAGTTGCGC GAGGATTACA CCAGTATGCT GGTGCACGAC
CTGCGCGCAC CGCTTACATC GATCATGAAC GGCGTGATGA TGCTTCAGCG CGGCATCGTC
GGACCGGTGA CCGAACAGCA GCAGGAGTTG CTGAAGATCG CCTATCAGGG CAGTCAGACG
ATGCTGCACC TGATCAATAC GCTGCTCGAT ATCTCAAAGA TGGAACAGGG CCGGATGGAC
CTGGACCTCA AGCCATTGCC GATCTTCAGC GTCATCGATC AGGCAATCGA GCGCCTGCAG
CATCTGGCCA GCAGTCGCGG CGTGACGATT GAACAACGCC TGGCGCCCTA TCTCCCGCCG
GTCGAGATCG ATGGCGAAAA GATCGTGCGC GTGTTGCAGA ACCTGCTCGA TAATGCGATC
AAGTTCTCTC CGGCGCAGGG CGTGGTGACT ATCGGCGCGT TCCTGGCAGG AGGAACACAT
GCACCGCCGG ATGATGTACC GGTGCATGTG ACGTTCAACG ATTCACGAGA CTATCTGGTC
GTATGGGTGC AGGACCGCGG TCCGGGCATT CCACCTGCCT ATTTTCAGCG CATCTTCGAA
AAGTTCGGTC AGGTGCGCGG GCGAAAGGTG CGCGGGACCG GGCTGGGGTT GACCTTCTGC
CGCCTGGCAG TGGAAGCGCA CGGCGGGCGC ATCTGGGTTG AGAGCGAAGA AGGCGCCGGG
AGCGTGTTCG CATTTGCACT GCCCATCAAT GGATAG
 
Protein sequence
MEAQVPTNQM YDIVEWTSSD DPLLESLGRI AQSVERATTL DQLLHLSLIE LTRLCRADRA 
IALLKDVQGR AVWVCEYPQS GDAPELTLDA ISGAADAMRL RRPIIVHPQE QALLARDVRV
LLVAPLIARD ETLGALAICS AHATRTFDSK DVALIRALSG QIALVIMSHR SCESVERRTQ
ELKTLNDIAS VVTSTLDTRE VYRLVVQQLS DYFHVEAGSL LLVDEATGDL EFVMTIEGGE
EKLAGFRVPA GQGVVGHVVR TGRWEIVHDV SRDPRFYRQI SEATGFSTRS ILCVPMIAKG
RVIGAIELLN KIGGDFDEED ALRLMRMAAF IAVAIENARL FQQVTAGRDR MASVLRSTAD
GILMADMRGE IQIANPLAVE ICGCPEESLI GRRIDDVVAE LYARAHDITT PSWSQEVAVP
AQISDLAFAS GAHRYVRLIR LPVYDAQNEP RGELLILRDI TQERDLEQLR EDYTSMLVHD
LRAPLTSIMN GVMMLQRGIV GPVTEQQQEL LKIAYQGSQT MLHLINTLLD ISKMEQGRMD
LDLKPLPIFS VIDQAIERLQ HLASSRGVTI EQRLAPYLPP VEIDGEKIVR VLQNLLDNAI
KFSPAQGVVT IGAFLAGGTH APPDDVPVHV TFNDSRDYLV VWVQDRGPGI PPAYFQRIFE
KFGQVRGRKV RGTGLGLTFC RLAVEAHGGR IWVESEEGAG SVFAFALPIN G