| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1481 |
|---|
| Symbol | |
|---|
| ID | 5208436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1804179 |
|---|
| End bp | 1804898 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640595090 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001275826 |
|---|
| Protein GI | 148655621 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.175599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTTC AAGGGCGGGT AGCGATTATC ATCGGGGCTT CGAGCGGCGT CGGGTATGAG
ACGGCACGGC GTCTGGCTCG CGAAGGTGTG TCGGTGGTGG CTGCGGCGCG ACGCCGCGAC
CGGCTTGAGT CGCTGGTGGC TGAGATTGCC GGAGAAGGGG GGCGGGCGGT TGCGATTCCA
ACCGATGTGA CTGACTCGGA ACAGGTGGAG CGATTGGTCG AAAGTGCGGT CAATCTGTTC
GGGCGGGTTG ATATTCTGGT CAACTCGGCG GGGGTGACGC ACAAAATTGC GCCGCTCGAG
CAGTTCAGCA ATGATGATTT TCGGCTGGTG ATCGAGACCA ATCTGCATGG AACATTCTAT
GCGGCGCGTG CAGTTATTCC CCACATGAAG CGTCAGCGAT CCGGTACGAT TGTCAATATC
GCCTCGCGGG TGGGGAAGAT CGGTATTGCC AATATCGCTC CATTCTGCGC AGCCAAATTT
GCGCTCGACG GTCTCAGTCA GGCGCTTGGC GCAGAGTTGC GTCCGTACAA TGTTTTTGTG
ACCACTATCT TTCCAGGGCT GATCAACACC GAACTGGAAC CGCTCAATCC CGGCGAAGAG
TTTCGTCGGC GCCTGATGAC GGCTGCCGAT GTAGCGGAGG TTATTCTGTG GGTATGCACG
CTTCCGCCGA CGGTACGGGT TGATGAACTG CCGATCATGC CGCGTCAGAT CGACATGTGA
|
|---|
| Protein sequence | MRLQGRVAII IGASSGVGYE TARRLAREGV SVVAAARRRD RLESLVAEIA GEGGRAVAIP
TDVTDSEQVE RLVESAVNLF GRVDILVNSA GVTHKIAPLE QFSNDDFRLV IETNLHGTFY
AARAVIPHMK RQRSGTIVNI ASRVGKIGIA NIAPFCAAKF ALDGLSQALG AELRPYNVFV
TTIFPGLINT ELEPLNPGEE FRRRLMTAAD VAEVILWVCT LPPTVRVDEL PIMPRQIDM
|
|---|
| |