| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1430 |
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| Symbol | |
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| ID | 5208384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 1741028 |
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| End bp | 1743397 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640595041 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001275778 |
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| Protein GI | 148655573 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000308935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00155997 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGGCGAGA AACTGGTTAT TGTCGAGTCG CCAGCCAAGG CGCGCACCAT CCAGAAGTAC
CTCGGTCAGG GGTATCGGGT CGAGGCGTCG ATGGGGCATG TTCGCGATCT GCCGAAGAGC
GACCTTGGCG TTGATCTCGA TGCGAACTTT ACGCCGGTGT ATGAGGTTTC GCCGGGCAAG
GAGAAAATCA TTGCCGCGCT GCGCAAATCG ATTCGCCAGG CGGATGCCGT GTATCTGGCG
ACCGACCCGG ACCGCGAGGG GGAAGCAATT GCCTGGCATA TCACCGAGGC GGCGAAAATT
CCGCGCGGAA AGCCAGTGTA CCGGGTTGTC TTCACCGAAA TTACGCCTGG TGCAGTGCGC
AGCGCCATGG CGTCGCCGCG CGACATTGAT CGGCGGTTGG TCGATGCGCA GCAGGCGCGT
CGTGTGCTGG ATCGTCTGGT GGGCTACAAA CTGTCGCCGC TCCTGTGGGA GAAAGTGCGA
CGCGGGTTGT CCGCCGGGAG GGTGCAATCG GTTGCAGTAC GCCTGATCGT TGAGCGTGAA
CGCGAGATCG AGGCATTCGT TCCGCAGGAA TACTGGACAA TCGAAGCCGA TCTGCTCAAA
CAGGAAGCGC GCGATCCGTT TCGCGCCGTG CTGATCGAGC GTGCTGGCAG GAAACTCGAA
AAGTTCGACA TCGGCTCAGG TGAGCAGGCG CAGGCGATCA TTGTCGATCT GGAAGGCGCC
GCGTATATCG TGCGCAAGGT GACGCGCCGT GACAAACGAC GCAGCCCGCC GCCGCCGTTC
ACTACCAGCA CCCTTCAGCA AGAAGCCGGG CGCAAACTCG GCTTTTCCGC AAAACGCACT
ATGGCAGTGG CACAACAGTT GTACGAAGGG GTGGACATTG GCGGCGATGA GGGTTTGGTT
GGTCTTATCA CGTATATGCG CACCGATAGC GTGAATGTAT CGCGCGAAGC GCAGGAAGAA
GCACGCATCG TTATTCGCGA TCGGTACGGC GAAGCATACC TGCCGCCCAA ACCGCCGGTT
TACAAAACGA AGACCAAAGG AGCGCAAGAG GCGCACGAAG CCATCCGTCC AACCCTCAGC
CGGCGCACGC CGGAACAGGT GCAACCCTAC CTGACGAGCG ATCAGTACCG TCTCTATGAG
TTGATCTGGA AACGGTTTGT CGCCAGCCAG ATGGAGGCGG CGGTGTTCGA CAGTACGACG
GTGGACATTG GCGCAGGGCG CGGGATCGAG CGCAGTGCGG GCAACGATCC GTACACCTTC
CGAACCACCG GTTCCGTCCT GAAGTTCCCC GGATTCCTGG CGGTCTACAA CGTCAGCCTG
GACGAAGGCG AGGAGGATGA GGATAGCGAA CGGCGATTGC CGCTGCTGGC GGAGGGTGAT
GTGCTCGCGC TGGTGCAACT GTTGCCGGTG CAGCACTTCA CCGAACCGCC GCCACGCTTC
ACCGAAGCCA GCCTGGTGAA GGAGTTGGAA CGTCTCGGCA TCGGACGTCC TTCCACGTAT
GCACCCACCA TCTCGACGAT CATCGAGCGT GAGTACGTTG AACTTGCGGA TAAGAAACTC
GTGCCGACTA CCCTTGGCAG AGTTGTGACC GACCTGTTGG TGCAGCATTT CCCGAGCATC
GTCGATTATG GCTTCACCTC GGAAATGGAG CAGCAACTCG ATGACATCGC TGAAGGGGAG
AAAGAGTGGA CGCCAGTATT GCGCTCCTTC TACGAACCGT TTGAGCAGAA ACTGGCGGAC
GCGCAGCGCA GTATGCGCAA TGTCAAGCGC GAGGAGATCC TGACCGACCT GACCTGCCCA
AAGTGCAGTC AGGGACAGCT GGCGATCCGG TTCGGCAAGA ATGGCGAATT CCTGGCATGC
AACCGCTACC CGGAGTGCGA TTTCACCAGT GACTTTCATC GCGACGGCGA GGGACGCATT
GTGATCGATG CGCCAGCCGC GCCAGAAGTG AGTGACGTCA TCTGTGAGTT GTGCGGACGA
CCAATGGTGC TGAAGAAGAG CCGGTTCGGT CCATTCCTGG GATGCAGCGG CTACCCGGAG
TGCAAAAATA CCCGACGCCT CGACAAACAG GGGAAGCCGG TGCCGCCGCC AAAGGCGACC
GGCGTGACCT GCCCGAAGTG TCGTCAGGGG GAATTGCTGG AGCGGCGCGG CAAGTTTGGT
CGTCCGTTCT TCGGATGCAG TCGTTATCCG AAGTGCGACT ACCTGGTGAA CTCGCTCGAG
GAAGTTGCAA ACTACACGCC CGAGAATAAC GCGCCAATGG AGGCGAAGGC AGAGGAACAA
CCTGCAACGA AGCGAACAAA GACATCCACC GGCAAAAAGC GGGCAAAAAC AACTGCACCT
GGGAGCGGAA CACCGAACGT GGAAGATTGA
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| Protein sequence | MGEKLVIVES PAKARTIQKY LGQGYRVEAS MGHVRDLPKS DLGVDLDANF TPVYEVSPGK
EKIIAALRKS IRQADAVYLA TDPDREGEAI AWHITEAAKI PRGKPVYRVV FTEITPGAVR
SAMASPRDID RRLVDAQQAR RVLDRLVGYK LSPLLWEKVR RGLSAGRVQS VAVRLIVERE
REIEAFVPQE YWTIEADLLK QEARDPFRAV LIERAGRKLE KFDIGSGEQA QAIIVDLEGA
AYIVRKVTRR DKRRSPPPPF TTSTLQQEAG RKLGFSAKRT MAVAQQLYEG VDIGGDEGLV
GLITYMRTDS VNVSREAQEE ARIVIRDRYG EAYLPPKPPV YKTKTKGAQE AHEAIRPTLS
RRTPEQVQPY LTSDQYRLYE LIWKRFVASQ MEAAVFDSTT VDIGAGRGIE RSAGNDPYTF
RTTGSVLKFP GFLAVYNVSL DEGEEDEDSE RRLPLLAEGD VLALVQLLPV QHFTEPPPRF
TEASLVKELE RLGIGRPSTY APTISTIIER EYVELADKKL VPTTLGRVVT DLLVQHFPSI
VDYGFTSEME QQLDDIAEGE KEWTPVLRSF YEPFEQKLAD AQRSMRNVKR EEILTDLTCP
KCSQGQLAIR FGKNGEFLAC NRYPECDFTS DFHRDGEGRI VIDAPAAPEV SDVICELCGR
PMVLKKSRFG PFLGCSGYPE CKNTRRLDKQ GKPVPPPKAT GVTCPKCRQG ELLERRGKFG
RPFFGCSRYP KCDYLVNSLE EVANYTPENN APMEAKAEEQ PATKRTKTST GKKRAKTTAP
GSGTPNVED
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