| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1330 |
|---|
| Symbol | |
|---|
| ID | 5208282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 1636635 |
|---|
| End bp | 1638692 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640594944 |
|---|
| Product | shikimate/quinate 5-dehydrogenase |
|---|
| Protein accession | YP_001275683 |
|---|
| Protein GI | 148655478 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5322] Predicted dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.372745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGA TTGTGAGTAT CAGCCTTGGT TCTGCACGAC GCGATTACCG ATTTGTTACG
ACTGTTCTGG GGCAACCGAT CGAAGTGCGC CGCATCGGCA CAAATGGCGA CACCGCCCTG
GCTGCGTCAC TTGTGCGCGA CTTTGACGGC AAAGTGGATG CCATTGGTCT TGGTGGATTG
ACGTCGGTCT TCCATGTTGG CGCGGCGCGT TACCCGCACC ACGAAGCCAT CTCGATCGCG
CGCCAGGCGC GTCGCACGCC GGTGGTCGCT GGCAACCTGA TCAAACAGAC CCTCGACCGC
TGGTGTGTGC AACAGGCGAA TCAGGCGCAG CGCGGCATGT TCAACTACCG CCGGATTCTC
GTCACCAGCG GGATCGACCG CTACGCGCTG GCGCAGGCGC TGGCGCAGTA CGACGCTGAG
TTGCGCTTCG CCGACCCGGT CGTTCACAGC GGGTTGCCGT TCCTGCCGCT GCCGCGCACC
ATCGCCCAAC TCGATATGTA TGCGGCGACG ACGCTGCCGA TTGCGGCGCT GCTGCCATAC
CGCGTGCTGC ATCCGGTGGC GCTGGGGAGC GAAGGGCACG ATGCGCGCGC CGAAAAGCAC
TTTGCCTGGG CGGACGTGAT TGCCGGCGAT TTTGCCTACA TTCGGCGTTT CGCACCGCGC
GATCTGAAGA ACAAGGTGAT CGTCACCGAC GACCCGTCGC CCGACGAGAT CGAAGACCTG
CGCGCACGCG GCGTTCGCAC CCTGGTTACC CTTTCGCCGC GCCTGGAAAG CCTGGAACCG
GCGCAGCGCT CATTCGTCTC CGCCGATGTG CTCGAAGCGA TTGTCGTGGC GATCCTGGAG
TCGGGACCAA CACCGACCGA AGGAGACATT ATCAACTTCA TCGATGAGGC GGAGTGGGGA
CCGGAGGTTA TCACCCTCAG CGATACGGCG GAGAAACCAC GGTTCGCATT TGTGATCCAT
CCGCTCTCCC CGAAGTATAT CGCCAACCAC CCGCGCTTCC GCTTCACCCG TTACCTGCCG
GAGCGCCTGG TCGAACGGGT CGCGGCGCAC TTCCCGCCGA TGTATATCTC GAAGATCCGC
GGCATCCGTT CGCAGGCGAC GGGTGAGGAG ATCGAGGGAC TGTTGTTCAC CCTCGGAGCG
ACCCCGCGCG AACTGATGCG CCACGACACC TCATTCACCT ATCGCCGCCT GATCAGGTGC
GCCCGCATGG CGGAACGCAT GGGCGCAAAG ATCATGGGGC TTGGCGCATT TACGTCGGTG
GTGGGTGATG CCGGCATTAC CGTGGCGCAG AAGAGCGATA TCGGGATCAC ATCGGGCAAC
TCGCTGACTG TGGCAGCCAC GCTCGAAGCG GCCAAGCAGG CGGTCATCAA GATGGGCGCC
ACCGACCTGA CACGCGGCAA AGCGATGGTC GTCGGCGCTA CCGGCTCGAT CGGTTCGGTC
TGTGCGCGCC TGTTGGCGCA GGCGATCGGT GACGTGGTGC TGGTGGCGCC GCGCGTGGAA
CGCCTGCTGG CGCTCAAGAA GCAGATCGAA GCGGAAACGC CCGGCGCACG GGTGACGGCG
ACGACCAGCG CCGATGCATA TCTGGCGGAA TGTGATCTGA TCGTCACCAC GACATCGGCG
TTGAGCGGCA GAGTGATCAA TGTCGATAAA CTCAAGCCCG GCGCCGTCGT GTGCGATGTG
GCGCGCCCGC CGGATGTGAA GAAAGAAGAT GCAGCCCGCC GCCCCGATGT GCTGGTGATC
GAGTCGGGCG AAATCCTGCT GCCCGGCGAA CCCGACTTCG GCTTCGATAT CGGACTGCCG
CCCGGCACGG CGTATGCCTG CCTCTCTGAG ACGGCGTTGT TGACCATGGA ACATATGTAC
GGCGATTACA CCCTTGGTCG AAACATCGAA ATCGAAAAGG TCAAGGAAAT GTACCGCCTG
ATGAAGAAGC ACGGTCTCCA GCTCGCCGGT CTCCGCTCGT TCGACGAGTA TGTGACTGAC
GAGATGATCG CAGAAAAGCG ACGCCTGGCG GAGGAACGCC GACGCCAGAT CGGACGTCCA
GTTGGGACGA TGTCGTGA
|
|---|
| Protein sequence | MKRIVSISLG SARRDYRFVT TVLGQPIEVR RIGTNGDTAL AASLVRDFDG KVDAIGLGGL
TSVFHVGAAR YPHHEAISIA RQARRTPVVA GNLIKQTLDR WCVQQANQAQ RGMFNYRRIL
VTSGIDRYAL AQALAQYDAE LRFADPVVHS GLPFLPLPRT IAQLDMYAAT TLPIAALLPY
RVLHPVALGS EGHDARAEKH FAWADVIAGD FAYIRRFAPR DLKNKVIVTD DPSPDEIEDL
RARGVRTLVT LSPRLESLEP AQRSFVSADV LEAIVVAILE SGPTPTEGDI INFIDEAEWG
PEVITLSDTA EKPRFAFVIH PLSPKYIANH PRFRFTRYLP ERLVERVAAH FPPMYISKIR
GIRSQATGEE IEGLLFTLGA TPRELMRHDT SFTYRRLIRC ARMAERMGAK IMGLGAFTSV
VGDAGITVAQ KSDIGITSGN SLTVAATLEA AKQAVIKMGA TDLTRGKAMV VGATGSIGSV
CARLLAQAIG DVVLVAPRVE RLLALKKQIE AETPGARVTA TTSADAYLAE CDLIVTTTSA
LSGRVINVDK LKPGAVVCDV ARPPDVKKED AARRPDVLVI ESGEILLPGE PDFGFDIGLP
PGTAYACLSE TALLTMEHMY GDYTLGRNIE IEKVKEMYRL MKKHGLQLAG LRSFDEYVTD
EMIAEKRRLA EERRRQIGRP VGTMS
|
|---|
| |