Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_1167 |
Symbol | rpmD |
ID | 5208118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 1446634 |
End bp | 1446870 |
Gene Length | 237 bp |
Protein Length | 78 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640594784 |
Product | 50S ribosomal protein L30 |
Protein accession | YP_001275524 |
Protein GI | 148655319 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1841] Ribosomal protein L30/L7E |
TIGRFAM ID | [TIGR01308] ribosomal protein L30, bacterial/organelle |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00970814 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0899698 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGAAAATCA CGTATCGCAA GAGTGCGATT GGGTATAGCC GCGACCAGAA GGCGACCATC CGTTCACTCG GGTTGCGCAG GCTGAACAGC GTCGTCATTC ACGACGATAC GCCAACCATT CGCGGGATGG TCTTCAAAGT TCGTCATCTG GTCAGCGTTG AAGAAATTGC CGACGACACC TCGCCAGATG CCGAAACGGG CGCTGATCTG GAGCGCGATG GGGGGAACCG ATCATGA
|
Protein sequence | MKITYRKSAI GYSRDQKATI RSLGLRRLNS VVIHDDTPTI RGMVFKVRHL VSVEEIADDT SPDAETGADL ERDGGNRS
|
| |