Gene RoseRS_0938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_0938 
Symbol 
ID5207884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp1157619 
End bp1158347 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content54% 
IMG OID640594552 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001275297 
Protein GI148655092 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACAAC GTATTCGTGT ACTGATTATC GATGATCACC CGCTTTTCCG CCAGGGTATT 
CGCTGGAGCC TGGAAGAAGC CGGCGATATG GAAGTGGTCG GTGAGGCGGA AAATGGGCAG
GAAGCGATCA AACTGGCGGA ACGTCTCGTC CCGGATGTCG TCCTGGTCGA TATCAATCTG
CCTGGACTGA ACGGTCTGGA AGTTGCCCGC GTGATCAAGC GACGGGAACC TCGCATTGGT
TTGATTGTCA TCAGTGTCTA CGAGGACGAT GATCAACTCT TCCAGGCTAT CAAAGTCGGC
GCGGCGGCTT ATTCATCGAA AGATGTGCAT CCGCGCGACC TGGTGCGCAT GATTCGCGAG
GTCGCGCGTG GAAAGTACCT GATCAACGAT AGTGTTATTG CCAAGCCGCA CGTTGCCACC
CGCGTGCTGC ATCAGTTTCG CGAGCTTGCC GCCACCGAAG ATGAGCGCAC CAGCGCCTTG
TTTGCGCCGC TGACGTCGCG CGAAATCGAG ATACTCGACT GCATCGCTCG AGGGTTGTCG
AACAAAGAGA TCGCTTCTCA ACTTTCGATC AGTGGGCAGA CGGTCAAAAA CCATATCACA
TCTATTCTGT CGAAACTGCA GGTCAATGAT CGAACGATGG CGGTTATTTA TGCGATCCAG
CGGGGATGGA TCCGCATGGG GTACGATGGA CATCATAGCC ACGCAGTGGG TGACAAGCGA
TCATCATGA
 
Protein sequence
MEQRIRVLII DDHPLFRQGI RWSLEEAGDM EVVGEAENGQ EAIKLAERLV PDVVLVDINL 
PGLNGLEVAR VIKRREPRIG LIVISVYEDD DQLFQAIKVG AAAYSSKDVH PRDLVRMIRE
VARGKYLIND SVIAKPHVAT RVLHQFRELA ATEDERTSAL FAPLTSREIE ILDCIARGLS
NKEIASQLSI SGQTVKNHIT SILSKLQVND RTMAVIYAIQ RGWIRMGYDG HHSHAVGDKR
SS