Gene RoseRS_0604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_0604 
Symbol 
ID5207542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp750940 
End bp752226 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content61% 
IMG OID640594223 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001274976 
Protein GI148654771 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0938215 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000133748 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCATCAG CGAATGATCC TGCCGACGAA CTGGAACATC TGCGCCATCG CGTTGCCGAA 
CTCGAAGCAT TGCTGGCGCA GCGTCGGCAG GAAGATGAAG TCACCGAACG ACTGAAGGCG
ATCATTGAAT ATACACCGGA CGTGATCAGC ACTGCCGACA GCGAAGGGCG GGTGATCTTC
ATCAATCCGG CCGGTCAGCG TCTCCTTGGC GGAGCGGATA ATCTGTCGGG TGAGAGTCCT
ATTCCCCGGT TTCATCCCGC CTGGGCGGCC GATCTGATCC TCAACCAGGG ATTGCCGCAG
GCTGCCCGCG ACGGGGTCTG GAGCGGCGAG ACGGCAGTGC TCGGCCCGCA GGGTCAGGAG
ATTCCGGTCT CACAGGTTAT CATTGCGCAC AAAAATGCTG CCGGAGCAGT CACCCACTAC
TCGACTATTA TGCGCGACAT GAGCGAGAGT CGCAGGGTCG AAGCAACGCT GCGCGACAGT
GAGCAACGCC TGCTCCGTTT TCTCGATGCG CTGCCGGTCG GGGTCTTCGT CGTTGAGCCG
GACGGTCGCC CCTTCTACGC CAACCGCAGC GCGATTGAGA TACTCGGCAA GGGTATCATG
CCCGATGCCA CCACCGGTCA ACTCGCCGAG GTTTACCGCG CTTTTGTCGC CGGAACCGAT
CAACTCTACC CCACAGAGCG CATGCCGCTG GTGCGCGCGT TACACGGGGA GACCTCATCG
GTCGATGATA TGGAGATCGA GCGCCCAGAT GGTCGGATAC TGATTGAGAT CCACGGCGCA
CCGATTCGCA ATGCGGAGGG GCACATTATG TACGGTATGG TGTCGTTCAC CGACATCACG
CTGCGACGAC GCGCGGAGGA AGCCATTCGT GAACGTGCGC TGCAACAGGA AGTGATCGAA
GCGCAACAGC TGGCGCTGCG CGAACTGAGC ACCCCGCTGA TGCCGATCGC CGAAGGGGTG
GTGGTGATGC CGATCATCGG CACGATCGAT AGCCGCCGCG CGCAGCAGAT TATGGAAACA
CTGCTCGAAG GCATTGCGAC CCATAGCGCC GATATTGCCA TCCTCGATAT TACGGGCGTC
AGAGTGGTCG ATACGCAGGT CGCCGGCGCG CTGATCCGGG CAGCGCAGGC GGCGCGGATG
CTGGGCGCAC GGGTTGTGCT CAGCGGTATC AGCGCCGAGG TCGCGCAGAC ACTGGTGCAC
ATCGGCGCCG AAATGCAGGA CATGATCGCG CTGCGCAGTC TGCAACAGGG CATTGCGTAT
GCGCTGGCGC AGCGGCAGCA GTTGTAG
 
Protein sequence
MSSANDPADE LEHLRHRVAE LEALLAQRRQ EDEVTERLKA IIEYTPDVIS TADSEGRVIF 
INPAGQRLLG GADNLSGESP IPRFHPAWAA DLILNQGLPQ AARDGVWSGE TAVLGPQGQE
IPVSQVIIAH KNAAGAVTHY STIMRDMSES RRVEATLRDS EQRLLRFLDA LPVGVFVVEP
DGRPFYANRS AIEILGKGIM PDATTGQLAE VYRAFVAGTD QLYPTERMPL VRALHGETSS
VDDMEIERPD GRILIEIHGA PIRNAEGHIM YGMVSFTDIT LRRRAEEAIR ERALQQEVIE
AQQLALRELS TPLMPIAEGV VVMPIIGTID SRRAQQIMET LLEGIATHSA DIAILDITGV
RVVDTQVAGA LIRAAQAARM LGARVVLSGI SAEVAQTLVH IGAEMQDMIA LRSLQQGIAY
ALAQRQQL