| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0494 |
|---|
| Symbol | |
|---|
| ID | 5207431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 625985 |
|---|
| End bp | 627820 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640594114 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001274868 |
|---|
| Protein GI | 148654663 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGCG CACAGTTCGA TGATGATGAA ATCCTTGGAA AGGCATACGA CGCGACCCTG
GTGCGTCGTC TGGGTGTCTT TGTCGCGCCG TACTGGCGTC GACTCGCACT GGCGACGGCG
CTGATGTTCG GTGGCGCAGC GGTGGAACTC GCTCCGCCAT TCCTGGTCAA ACAGGCAATC
GACGGTCCCA TCGCGGCGCG CGACCCATCC GGCGTGTTGC CGATCTTCGG GGTGTACATC
GTGGCGCTGC TGACTGCATT CGGCTTCCGC TACGGTCAGA CCTATATTGT CCAATCGGTC
GGGCAGCAGG TGATGGTCGA CATCCGTACC CGTATTTTCA GCCACATCCA GCGTATGAGC
CTGGCATTCT TCGACCGTAA CCCGGTCGGA CGATTGATCA CCCGCCTGAC GAACGATGTC
GATGCGCTGA ACGAGTTTAT CACGCAGGGA ACGGTGGCGC TGCTTGGTGA TCTGGTGCGC
TTGCTGTTCA TCGTGATCAC CATGCTGCTG CTGAACTGGC GGCTGGCGCT GATCAGTTTC
ATCATGTTTC CAGCGGTGAT GCTGGCGTCC AGTGTGTTTC AACGCATCAT GCGAACCATC
TACCGGCGCG TCCGGCAACG TATTGCGCGG ATCAATGCCT TTCTGAACGA ACAGATCAGT
GGGGTGCTGA TCACGCAACT GTTCAACCGC GAGGAACAGA GTCGCATTCG TTTTGCGGAA
CTGAGCCGTG ATTACCTGGC GGCGCAGTTG CAGTCGAACC GAACCTTCGC GGTCTTTTTC
CCACTCATTA ATTTCCTCTC GGTGACGGCA ATGGCGCTGC TCCTCTACTT TGGCGGGCAG
GCGGTGCTGG CAGACGTGGC GACGCTCGGT ATGCTGGTTG CGTTCATTCA GTATACCGAC
CAGGCATTCC AGCCGATCCG CCAGATCGCT GAACGCTACA ATACATTCCA GTCGGCGATG
GCATCGGCGG AACGGATATT CCGGGTGCTC GACACGCCTG CAACAGTCGT TGATCCAGAG
CATCCGCGCG CATTGCCGAC ACCGGTGCGC GGTGAGATCG CATTTAAGGA TGTATGGTTC
ACTTACGACA CCGATGCTGC CGGACCCGAT GGATTCGGGT TGACGGATAC CGATGACCGC
TGGGTGCTGC GCGGCATCTC GTTCACCATC CCGGCAGGAC AGGCAGTGGC TGTGGTGGGG
GCGACCGGCG CGGGCAAAAC ATCGCTCGTC AGCCTGATGG CGCGCTTTTA TGACATTCAG
CGCGGTTCGA TCACACTTGA CGGGATCGAT ATCCGCGACC TGCGCCAGAC CGACCTGCGC
CGGCACGTCA GCGCGGTACC ACAAGACCCG GTGTGTTTCA GCGGTTCCAT CGCCTCGAAT
ATCCGCCTGC ACGACGAGAG CATCAGTGAT GAACAGGTTC GCCGCGCTGC GGAGATTGCG
TGCGCAGCGC CGTTTATAGA GCGGTTGCCG GGTGGCTATG ATTACGAAGT GCGTGAACGC
GGCAGCAATC TGTCGGTTGG ACAGCGACAG TTACTGGCGT TTGCCCGCGC AATTGCGTTC
AACCCCGAAG TGCTGCTCAT TCTCGACGAA GCCACATCGA GCGTCGATAC CGAAACGGAA
GGGTTGATCC AGGAAGCGTT GGAGCGTATG ATCAAGGGGC GAACCAGCAT CGTCATTGCG
CATCGCCTCT CGACGATCCG CCACGTGGAC CGGATTCTGG TGCTGCACAA GGGGCGCCTG
GCAGAAGATG GCTCGCACGA CGAACTGCTG GCGAAGCGCG GTTATTACTA CCGTCTGTAT
CAGCTCCAGT TCGCGGGGGA ACTGAAAAAG AATTAA
|
|---|
| Protein sequence | MAGAQFDDDE ILGKAYDATL VRRLGVFVAP YWRRLALATA LMFGGAAVEL APPFLVKQAI
DGPIAARDPS GVLPIFGVYI VALLTAFGFR YGQTYIVQSV GQQVMVDIRT RIFSHIQRMS
LAFFDRNPVG RLITRLTNDV DALNEFITQG TVALLGDLVR LLFIVITMLL LNWRLALISF
IMFPAVMLAS SVFQRIMRTI YRRVRQRIAR INAFLNEQIS GVLITQLFNR EEQSRIRFAE
LSRDYLAAQL QSNRTFAVFF PLINFLSVTA MALLLYFGGQ AVLADVATLG MLVAFIQYTD
QAFQPIRQIA ERYNTFQSAM ASAERIFRVL DTPATVVDPE HPRALPTPVR GEIAFKDVWF
TYDTDAAGPD GFGLTDTDDR WVLRGISFTI PAGQAVAVVG ATGAGKTSLV SLMARFYDIQ
RGSITLDGID IRDLRQTDLR RHVSAVPQDP VCFSGSIASN IRLHDESISD EQVRRAAEIA
CAAPFIERLP GGYDYEVRER GSNLSVGQRQ LLAFARAIAF NPEVLLILDE ATSSVDTETE
GLIQEALERM IKGRTSIVIA HRLSTIRHVD RILVLHKGRL AEDGSHDELL AKRGYYYRLY
QLQFAGELKK N
|
|---|
| |