| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0406 |
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| Symbol | |
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| ID | 5207342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 515810 |
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| End bp | 517147 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640594032 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001274787 |
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| Protein GI | 148654582 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.809401 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGAGCC TTCCGTCTCA AAACCGGAAC CCTCCCCCCA ACGCCGGTCT CTGGCCCCTG
ACAACCTCCG TCGATCATGG CGGTCGCCTG TTCATTGGCG GGTGCGATGT AGCGGCGCTG
ACGCAGCAGT ACGGCACACC GCTCTACCTT TTCGACGAAA TGACCATCCG CGCTGCATGT
CGTGCCTGTC GCACTGCATT CGCCGATCAC TACCGTGGTA CAACCGCAGT GCATTACGCT
GGCAAAGCGT TGCTCAACAT CGCAATTGCG CAGATCATCG CCGATGAGGG GTTGGGACTC
GACGTGGTTT CAGGCGGTGA ACTGTACGTC GCGCTGCGCG CCGGATTCCC GACGCAGCGC
ATTCATATGC ACGGCAACGC TAAAACCCAC GCCGAACTGG AACAGGCGCT GGCAGCCGGG
ATTGGACAGA TTATCGTCGA TAACCTGGAT GAACTGGATA TGCTGAGGCG CCTGACCGCG
CATCGTTCGT CGCCACAGCC GGTTGCGCTG CGCATTGCGC CCAACATTGC CGCCGACACG
CATGCGCATA TCCAGACCGG TCACGCGACA TCGAAGTTCG GTCTGCCACT CGACGCGCTC
GATGCCGCCG CTGAGAAACT GTGCGCAGCG TCTGGCGTGC GTCTGACCGG GTTGCACGCT
CATCTGGGAT CGCAACTGTT CGATAGAGCG CCCTATGCGG CAGCCGTCGA GGTGTTACTC
GATAGTGCAG CGCGTCTGCG TGACCGCTTT GGCGTGTTGA TCGAAGAGAT AAACGCCGGT
GGCGGGATCG GCGTCCCGTA CACCACCGAT CAACCCCTGC CGGACATCGA TGCCTGGGCG
GCGCTGTTGG GCGACTCGCT GGTACGCGGG TGCGAACGCC GCGGATTGCC ACTCATGCGC
CTGGTGATCG AGCCGGGACG CTCAATCATT GCGCGCGCTG GCGTTGCGCT CTACACAATT
GTGGCAACCA AACCGCTTCC CCATATGCGC TTTCTCCATA TCGACGGCGG TATGGGGGAC
AACATTCGCC CTGCACTATA CGATGCGCGC TACACCGCAG CACTGGCGGA GCGGATGCGT
GATCCGGTTG AGGAATGTGT GGCGATTGCC GGTCGCTACT GCGAGTCTGG CGATGTCTTG
ATCCGTGACC TGATGCTGCC GCGTGCCAGG GTCGGCGAGA TACTGGCTGT TCCGGTCGCT
GGCGCATATA CGCTGAGTAT GGCAAGCACC TACAACCTGG CGCCCCGACC GGCGGTTGTG
CTGATCAATG AGGGAGAAGC GCGACTCATC CAGCGCCGCG AGACGTATGA AGACCTGATT
GCACGAGAGG TATGGTGA
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| Protein sequence | MESLPSQNRN PPPNAGLWPL TTSVDHGGRL FIGGCDVAAL TQQYGTPLYL FDEMTIRAAC
RACRTAFADH YRGTTAVHYA GKALLNIAIA QIIADEGLGL DVVSGGELYV ALRAGFPTQR
IHMHGNAKTH AELEQALAAG IGQIIVDNLD ELDMLRRLTA HRSSPQPVAL RIAPNIAADT
HAHIQTGHAT SKFGLPLDAL DAAAEKLCAA SGVRLTGLHA HLGSQLFDRA PYAAAVEVLL
DSAARLRDRF GVLIEEINAG GGIGVPYTTD QPLPDIDAWA ALLGDSLVRG CERRGLPLMR
LVIEPGRSII ARAGVALYTI VATKPLPHMR FLHIDGGMGD NIRPALYDAR YTAALAERMR
DPVEECVAIA GRYCESGDVL IRDLMLPRAR VGEILAVPVA GAYTLSMAST YNLAPRPAVV
LINEGEARLI QRRETYEDLI AREVW
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