Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0316 |
Symbol | |
ID | 5207251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 403902 |
End bp | 404675 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640593942 |
Product | TatD family hydrolase |
Protein accession | YP_001274698 |
Protein GI | 148654493 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0084] Mg-dependent DNase |
TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.207917 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.040307 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATGCAA CACACTTTAT CGACACGCAT GCTCATCTTG GATTGGCTCA GTTCGATGCG GATCGCGGCG CTGTTCTGGC TCGCGCCGCA GCTGCCGGGG TTGTGCGGAT CGTAGAAATT GGCTACGACC TGGCAACGTC GCGCGCTGCG GTTGCCCTTG CGGCGCAGCA CGAACCGATC TACGCGGTTG TCGGCGTGCA GCCGAACCAT GTGGCCGAAT TGCCGGACGA CTGGCTCGAT CAGGTGCGTG CGCTGGCAGG GCAACCGAAG GTCGTCGCCA TTGGCGAGAT CGGTCTGGAT TACTACTGGA ATGCAGCTCC GGCCGCTCAG CAAGAAGCCT GTTTCCGGGC GCAACTCGAT CTGGCGCGTG AACTGGGATT GCCCGTCGTT ATTCACAGCC GCGATGCGCA TGATGATACG ATCCGCGTGT TACGCGATGC GGCGCGTGGT CTGACCGGCG TTATGCACTC GTTCTCCGGC GACTGGAGGT ATGCTGAGCA CTGCCTGGAG ATTGGCTTCT CTCTCTCCTT CAGTGGTCCG GTCACCTTCC CGAAAGCCGT CGATCTGCAC GAGGTGGTGC GACGCACCCC GCTCGACCGG CTTCTCACCG AAACCGACAG CCCCTATCTG GCGCCGCACC CCTTGCGTGG AAAGCGTAAC GAACCCGCCA ATGTTCGTCT GATTGCCGAA CGTCTTGCTG TGCTGCGCGA AATGCCGCTC GATGCGCTGG TTGATGCCGT GTGGCGCAAT GCGAAAGCGA TATTCGGGCT ATGA
|
Protein sequence | MDATHFIDTH AHLGLAQFDA DRGAVLARAA AAGVVRIVEI GYDLATSRAA VALAAQHEPI YAVVGVQPNH VAELPDDWLD QVRALAGQPK VVAIGEIGLD YYWNAAPAAQ QEACFRAQLD LARELGLPVV IHSRDAHDDT IRVLRDAARG LTGVMHSFSG DWRYAEHCLE IGFSLSFSGP VTFPKAVDLH EVVRRTPLDR LLTETDSPYL APHPLRGKRN EPANVRLIAE RLAVLREMPL DALVDAVWRN AKAIFGL
|
| |