| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0267 |
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| Symbol | |
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| ID | 5207202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 337362 |
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| End bp | 339122 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640593896 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001274652 |
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| Protein GI | 148654447 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00117926 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGTCTG TTCCACAGAC ACAACGAAAA CTACGCCTTC CCCGGTTGCC GGTTCCGGTG
ATTATTGCAG CGGTGTTGAT CATTGCCGTG ATGGTGACGC TTGCTGTGCC GCGATTGACC
GGCAGCGCCG ATCCGCTTCA GGGCGGTACG CCGATCACCG TCACCCGTGA GACGCTCATC
GCCGGCATTA ATGCCACCGG ACGCATTGAG CCGCGTCAGG AAGCGGCGCT GAGTTTCACC
ATTCCCGGTC GCGTCGCCGA AGTGCTGGTC GCCGAAGGGG ACCGCGTTGC GGCTGGAACA
CCGTTGATCC GGCTCGACAA TCGTGAAGCG ATGGCGCAGG TAGCGTCTGC GCGCGCTGCC
CTGGCGCAGG CGGAAGCCGA TCTGAAACAA CTTCAGGAGG GCGCCACCCC AGAGGAGATC
GCGCAGGCGC GCGCTCAGGT TGAGGCGGCG CGCGGGGCGC TGGTGCAGAT CAGCGGGAGT
GTGACTGAGG CGGATATTGC CGCCGCCCGC GCCCGTGTTG ATGAAGCGCG CGCCCGACTC
AATGCGTTGC AGGGCGCACC CAACAATGAT CAGTTGACCG CTGCACGCTC CGCGCTCACC
GAAGCGCAGG CAGCCCTCGA ACGGCAGCGC AGCGCTCTCT CTGCCGCCAA ACTCGATGCT
GAACGTCAGG TCTTCGAGCG CGCCAATCGG CTGCGTGATG CACAAACGGC GTTTGCAGCC
GCGCGCGACA ATCTGGCGCG GGTCGAGGCG GACGGTAAAG ATCCATTGAC CGGCGCGCCA
CTTTCCGACG CTGGCAAGCG CACCTATGCC GATGCGTTTG CTCAGGCGGA GCGCGCGCTG
GCGGATGCAG AACTGGCGCT CAATCAGGCG CGGATCGCCT ATGAGACGGC GCGCCAGAAC
GAGATCACCG GTCTGGCGGA AGCCGAAGCG CGGGTTGCTA CCGCCCAGGC GAACCTTGAT
GCTCTGCTCA ATCCCAACCC CGACCGTATT GCTGCGGCGC GTGCTGCCCT GGCGCAGGCG
GAAGCCGACC TTGCCCGCCT GCTCGGTGAG CAGCGTCAGG GCGCTCTGGC AGCGCAGCGG
GCGAACCTGG CTGCCGCTGA AGCCAACCTT GCACGTCTCA CTGCCGACCC GCGTGCAACC
GATCTGGCAC GCGCCCAGGC GCGGGTGGCA CAGGCGCAGG CGCAACTCGA TCTGGCGCAG
ATCCGGCTCG ATGATACAAC CCTGACGGCG CCGTTCGATG GTGTTGTGGC GCGTATCAAT
GTTGCACCGG GCGAACAGGT CGCCCAGGGT CCGGTTCTGA CGCTGATCGA CGTGAGTCGT
TTCAAGGTGA CGGTCACCGT TGATGAGGTG GACGTCGTGC GGGTTGCGCC TGGTCAGGAC
GTCGAGGTGT TGATCGACGC GCTTGGTCCG CCGCCGCAGA TCGGTCGCGT GCAGCGCATC
GCGCCACAGG CAACCAATGA GCGCAATGTG ACCGCATACG AAGTCGAACT TGAAGTTGCG
CCGGGTGATC GTCCGTTGCG TTCGGGAATG ACCGCCAGCG CGACCATTAT CACTGCGAAG
CGCGAAAATG CGCTCAGTGT GCCGGTTCAG GCGGTTCGTG AGGAAAACGG GATGACCGTG
GTCGATGTCG TGGTCAACAA CAACGGACGC ACCACACTGG TGACGCAACC GGTCGAAACC
GGCATTCGCA CCGGTGATCG GATCGAAATT ATCAATGGAT TGAACGAAGG TCAGCAGGTG
TTGCTGCCGG GTGCGCAATA G
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| Protein sequence | MTSVPQTQRK LRLPRLPVPV IIAAVLIIAV MVTLAVPRLT GSADPLQGGT PITVTRETLI
AGINATGRIE PRQEAALSFT IPGRVAEVLV AEGDRVAAGT PLIRLDNREA MAQVASARAA
LAQAEADLKQ LQEGATPEEI AQARAQVEAA RGALVQISGS VTEADIAAAR ARVDEARARL
NALQGAPNND QLTAARSALT EAQAALERQR SALSAAKLDA ERQVFERANR LRDAQTAFAA
ARDNLARVEA DGKDPLTGAP LSDAGKRTYA DAFAQAERAL ADAELALNQA RIAYETARQN
EITGLAEAEA RVATAQANLD ALLNPNPDRI AAARAALAQA EADLARLLGE QRQGALAAQR
ANLAAAEANL ARLTADPRAT DLARAQARVA QAQAQLDLAQ IRLDDTTLTA PFDGVVARIN
VAPGEQVAQG PVLTLIDVSR FKVTVTVDEV DVVRVAPGQD VEVLIDALGP PPQIGRVQRI
APQATNERNV TAYEVELEVA PGDRPLRSGM TASATIITAK RENALSVPVQ AVREENGMTV
VDVVVNNNGR TTLVTQPVET GIRTGDRIEI INGLNEGQQV LLPGAQ
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