| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0056 |
|---|
| Symbol | |
|---|
| ID | 5206989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 64812 |
|---|
| End bp | 66632 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640593690 |
|---|
| Product | AAA ATPase |
|---|
| Protein accession | YP_001274449 |
|---|
| Protein GI | 148654244 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.414788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.844584 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAG CACAAGGCGT GCAGCATCCT GTGACCGCAT CAGAGCGTTC TGTATCATCA
TCCGCCGATT TCCTGCGCCG CCTGCGTCGT CTGGTGCTCG ACGAAGCCGA CAGTCAGCGC
CAGCAGATCG TGCAAACCTG GTCGAAGCCG ATCTCCGAGC GCGTAGCCCA GGGAGACGCC
ATTGAAGGGG TGCAGGTCGT TTCTGTGACG CCGGAAGGGA TCGTCGAACT TGCCTGCAAC
CGCAACGTCT CTCGTTTCCG TGAAGGTGAT ATCCTGCTGC TGAACCGCGG CAATCCCTTC
GAGGAGCCGC GCGTCCCCTG TACGCTCGAA GTCGATGACG AAACGCGCCT CCTGGTCTCG
ACCGACGATC CCGGCGTCAA TTGGGGACGA ATCCTGCACC AGCGCACCGG ATGGGTGCTG
GATTACGGCT ATGTCGACTT CAGTCCGTAC ATCCTCGACG CACTTGATCA GACTGCCGGG
ACAGCAGTCG GTCAGCAGCG CATCCTGCCC CTTCTGATGG GTCAGGTGAA CCCGACGCTC
GACTATGCTC GCTATGAGCG TGCATATGAG CGCGCAGAGC AGTGGGGGTT GAACGCGACG
CAGTGTGAGG CGCTGGCAAA TGCTTATGCC ACCAACCTGA CCTGGCTGAT CCAGGGACCT
CCCGGAACAG GCAAGACGCT TGTGCTTGCG CGTCTTGTGC AACTGCTCGT CGAGGATGGC
GAGCGTGTGT TCGTAACCGC GTTCACGCAC CGGGCGATCA ACAACGCGCT GGAAAAGCTG
GCTGAACTGG ATCGTCTCGG TGATGCAGCG CCGGCGTCGT TCTGCAAAAT CGGGCGTCAG
GCAAGCGCCA GCGAAGGTGC AGATGTTCGG AACTACGAGA CGTTCGAAGG GTCGCCGCTT
GCTGAGTTAA GCGGCGGGTA CGCAATTGGC GCCACGCCAT TCGCAACGCG CACACAGCGT
CTCAACGGTG TTGAGTTCGA TACGGTGATC TTCGATGAAG CCAGTCAGAT TACCATGCCT
CTCGCCATTA TGGGAATGCT GGTCGCAAAA CGGTATATTT TCATCGGCGA TCACAAACAG
TTGCCGCCGG TGCTGACCGC GCGACACAGG GAGGCATGGC TCCGCGCCTC GGTGTTTGGC
GCGCTTGTCG GGCGACGGTT CGACACGATG CTCGACGAAA CCTATCGCAT GAACGCTGAA
CTGACCGAAT GGCCCAGCCA GCAGTACTAC GACGGTCAAC TCCGGTGTGC GTCGAAAGAG
ATTGCTCAAC GTAGGGTTGC GTATATGCGA CAGCCAACGC GCTTCGAGAC TATTCTTGAC
CCGGAAGCGC CAAAAGTGTT TGTCGATCTG CACCATCGCA ATGCCACTAC AAGCAGCATG
GCGGAGGCGA GCCTGATCTG TGATCTGATC GCTGAACTGC TGGCATGCGG CGTCAAACCC
GACGAAATTG GCGTCGTCAC GCCGTACCGG GCGCAGGCGC GCACCATTCG CAATCTGCTT
CACTCCATGC CTCCCGACAG CGAACAACGG CGGAAGATTA TTGTTGATAC CGTCGAACGG
ATGCAAGGGC AGGAGCGCGA TGTCATCTTG CTGTCGCTGA CAACCTCGAA TCCGGCATTT
GCCGCCGGGA TCGCCGATTT CTTCCTGCAA CCGGAACGGT TGAACGTCGC CATCACCCGC
GCCCGGGTGA AACTCATTAT CGTGGGAAGC AGCCATCTGC TGTCCCTGGT CTCAGAGGAT
CCGGATATCC AGGTGTTGGT GGAACAGTTG AAAGAATGTA TCGCCTCATG CGCGTATCGT
ACCTCCCCGT ATGTGCGGTA A
|
|---|
| Protein sequence | MTTAQGVQHP VTASERSVSS SADFLRRLRR LVLDEADSQR QQIVQTWSKP ISERVAQGDA
IEGVQVVSVT PEGIVELACN RNVSRFREGD ILLLNRGNPF EEPRVPCTLE VDDETRLLVS
TDDPGVNWGR ILHQRTGWVL DYGYVDFSPY ILDALDQTAG TAVGQQRILP LLMGQVNPTL
DYARYERAYE RAEQWGLNAT QCEALANAYA TNLTWLIQGP PGTGKTLVLA RLVQLLVEDG
ERVFVTAFTH RAINNALEKL AELDRLGDAA PASFCKIGRQ ASASEGADVR NYETFEGSPL
AELSGGYAIG ATPFATRTQR LNGVEFDTVI FDEASQITMP LAIMGMLVAK RYIFIGDHKQ
LPPVLTARHR EAWLRASVFG ALVGRRFDTM LDETYRMNAE LTEWPSQQYY DGQLRCASKE
IAQRRVAYMR QPTRFETILD PEAPKVFVDL HHRNATTSSM AEASLICDLI AELLACGVKP
DEIGVVTPYR AQARTIRNLL HSMPPDSEQR RKIIVDTVER MQGQERDVIL LSLTTSNPAF
AAGIADFFLQ PERLNVAITR ARVKLIIVGS SHLLSLVSED PDIQVLVEQL KECIASCAYR
TSPYVR
|
|---|
| |