| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0014 |
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| Symbol | |
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| ID | 5206947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 15683 |
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| End bp | 17470 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640593648 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001274407 |
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| Protein GI | 148654202 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.328102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAC CTGTTCTCGC GCTCTTCCTG AGCATTGTTC TCATCATTGC CGGTTGCGGC
GCGTCACCTG CAACTGCGCC CCCAACTGCT GAGCCGACCG TCGCGCCTTC TGCGACACCG
CTGAGCGAAG AGGCGGCGCT GCTCGCTACT ATAGCAGCCA ATGCGCCATC TCCCGCAGCA
GCGACGCCTA CCGTTCCACT GCCGACCACG TTCCCGACCA TCACCCTCGG ACCGACAGCC
GAACCGCGTC CATTGCCGGA AGGATGGTGG GATACTGCGG TGTGCTACGA AATCTTCGTT
CGCTCGTTCT ACGATAGCAA CGGCGACGGC ATTGGCGACA TCAATGGGTT GATCGAGAAA
CTCGACTACA TCAACGACGG CGATCCAACC GGAGGCGATG ATCTGGGCGC CACCTGCATC
TGGTTGATGC CGGTGGCAGA AGCAGCGAGT TACCACGGCT ACGATGTCAT CGACTACGAC
GCCATTGAAA AAGACTATGG CACAAACGAC GATTTCAAGC GTCTGATCGA AGCGGCGAAC
AGGCGCGGCA TCCGGGTGAT CGTCGATCTG GTGTTGAACC ACACCTCCAG TGCGCATCCC
TGGTTTCTCT CGGCGTTGAA CGATCCATCA TCACCCTACC GCGACTGGTA CATCTGGTCG
CCAGTTGATC CAGGTTACCG CGGACCGTGG GGACAACAGG TGTGGCACCG TTCGCCGGCG
CGCAACGAGT ACTACTACGG CATCTTCGTC GCCGAAATGC CCGATCTGAA CTATCGCAAC
CCGGAAGTCG TCGCCGAGGC GGAGCGAATC GCCGCCTTCT GGCTGAATGA GATGGGGGTC
GATGGGTTCC GACTGGATGC CATTAAACAC ATCGTTGAGA ACGGTTCTGA GCAGGAAGGC
ACGCGCGAAA CCCACGCCTG GATGCGTTCG TTCGAGGCGG CTATCGAGCG GATCAAACCG
GGCGCGTTCA CAGTCGGCGA AGTGTTCGGC GGGCGCGCTG GCTCGCTTGC TGCGTACTAC
CCCGACCAGC TCGACACCTA CTTCGAGTTT GGCGTTGCAG AAGGGATCCT GCGCTCGGCG
AACACCGGCG CGCCAGGACC ATACCTCACC GCTGTGGAAG AAGCGCTGAC ACGCCTTCCC
TACCAGCGCT GGGCGCCGTT CCTCACCAAC CACGATCAGG AACGCGCCAT GACTGTTTTT
GGCGGCGATG TCGGCAAAGC GCGCGTTGCA GCAATTGCGT TGCTGACCCT GCCCGGTCTC
CCGTTCATCT ACTATGGCGA GGAGATCGGC ATGACGGGCG CAAAACCGGA TGAGCGCATC
CGCACGCCGA TGCAGTGGAC CGGCGAACCC AGAGCGGGGT TCACGACCGG CACACCCTGG
CAGGCGCCAC AGAGCGACTT CACGACGGTG AATGTCGCTG CCCAACAAGC CGATCCCGAC
TCGTTGCTCA ACCTGTATCG CACCCTCATC CGGCTGCATA CCACCCGACC GGCGCTCGGC
AAAGGCGATT TCACGCCTGT GAGCGCAACC GGCGGCGCAG CGGCTTTTCT CCGTCGCCAC
AACGACGATG TTGCACTGGT CGTCATCAAC TTCAGCGCCA ACCAGGTGTC GGGCGTTACC
CTTTCGGCGG CGCGGAGCAA TCTTGAAGCG GGTACGTACA ACCCTGATGT TCTGTTCGGC
AGCGGCAACC TCCAACCGCT GACCGTCGGC GCCGATGGAT CTATCAGCGC GTATGCACTG
CCCGATATTC CGCCACAAAG TGCGCTGATT GTCAGTCTTG TCAAGTGA
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| Protein sequence | MKAPVLALFL SIVLIIAGCG ASPATAPPTA EPTVAPSATP LSEEAALLAT IAANAPSPAA
ATPTVPLPTT FPTITLGPTA EPRPLPEGWW DTAVCYEIFV RSFYDSNGDG IGDINGLIEK
LDYINDGDPT GGDDLGATCI WLMPVAEAAS YHGYDVIDYD AIEKDYGTND DFKRLIEAAN
RRGIRVIVDL VLNHTSSAHP WFLSALNDPS SPYRDWYIWS PVDPGYRGPW GQQVWHRSPA
RNEYYYGIFV AEMPDLNYRN PEVVAEAERI AAFWLNEMGV DGFRLDAIKH IVENGSEQEG
TRETHAWMRS FEAAIERIKP GAFTVGEVFG GRAGSLAAYY PDQLDTYFEF GVAEGILRSA
NTGAPGPYLT AVEEALTRLP YQRWAPFLTN HDQERAMTVF GGDVGKARVA AIALLTLPGL
PFIYYGEEIG MTGAKPDERI RTPMQWTGEP RAGFTTGTPW QAPQSDFTTV NVAAQQADPD
SLLNLYRTLI RLHTTRPALG KGDFTPVSAT GGAAAFLRRH NDDVALVVIN FSANQVSGVT
LSAARSNLEA GTYNPDVLFG SGNLQPLTVG ADGSISAYAL PDIPPQSALI VSLVK
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