Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lreu_1941 |
Symbol | |
ID | 5188896 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus reuteri DSM 20016 |
Kingdom | Bacteria |
Replicon accession | NC_009513 |
Strand | - |
Start bp | 1997177 |
End bp | 1997944 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640591779 |
Product | single-stranded nucleic acid binding R3H domain-containing protein |
Protein accession | YP_001272510 |
Protein GI | 148545140 |
COG category | [R] General function prediction only |
COG ID | [COG1847] Predicted RNA-binding protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0000134575 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAGTTT TTACTGGAAC AACAATTGAA GAAGCAAAAG AAAAGGCCCG TACACAATTG AAGCCAACCG TTAATCAAAC GATTGAATTT ACGGTTCTTC AACAGCCGCG GCACGGCTTT CTAGGAATTG GACGACGCCA AGCGCAAGTG GATGCAGTAA TAAAAGATAA AGAAATTGCG ATGCCCTCAC TGGAAGAAAA AGACGAGCAG CTAGCAAAAG AGCCAGAACA AAATCCTGCA AGCTTAAATT CCGCTGAAGA TGAGCTCGAT CCTGCTGAAA TCAAGCGGCG GCAACAGGCC AATCTTAAAA AGGTTCAAGC AACTAGTAAA GAATTAGTTG AGTATCTAAC AACAGTATTT AAGGAATTGG GTATTGCTGT TGAGCCACGG ATTATTAATT TAGAAGCTCA TGACCTCAAA ATTGATCTTC AAACTGAGGA AAATGGACGG GTGATCGGTA AGCACGGTCG CCGGATCAAC GCGATGGAAC AACTTAGTAA TATATTCATG GATTACCATG GAGCGGCAAA AGTAAATGTT GAACTTGATA CTTCCAATTA TCGTGAACGG CGTCAAGAAG CAGTTCACAA TCTAGCGCAA AAGGCAGCGA TGGAAGTAGT TGCAAGCGGA AAAGCTGTTT TTATGGACCC AATGCCAGCT CGTGAACGGA AACAAATTCA CCATGAACTT GAGAATAATA ACCACGTAAA AACATACTCC CACGGTCGGG AACCTTACCG GAGTATCGTG ATTGCTCCCC AAGACTAA
|
Protein sequence | MAVFTGTTIE EAKEKARTQL KPTVNQTIEF TVLQQPRHGF LGIGRRQAQV DAVIKDKEIA MPSLEEKDEQ LAKEPEQNPA SLNSAEDELD PAEIKRRQQA NLKKVQATSK ELVEYLTTVF KELGIAVEPR IINLEAHDLK IDLQTEENGR VIGKHGRRIN AMEQLSNIFM DYHGAAKVNV ELDTSNYRER RQEAVHNLAQ KAAMEVVASG KAVFMDPMPA RERKQIHHEL ENNNHVKTYS HGREPYRSIV IAPQD
|
| |