| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1641 |
|---|
| Symbol | |
|---|
| ID | 5188445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 1698198 |
|---|
| End bp | 1699502 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640591487 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001272218 |
|---|
| Protein GI | 148544848 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0119358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATATA CAAAGAAGAA TTACAAAAAA GCACCTTTAT CATCAATTCA CTTTCGAATA
TATTTTGCCC TCGCTCTTGG ACAAATTGCT TGTGGTTTTG CTCTTGGAAT TAGTGGAACC
GCACTTTCCC AAGCAACTGA TTATATCAAT ATCCCCGACT TTTGGGTTGG CCTAATTGGT
GCTGGGAGTT TAATTGGACT TGCTGGGAGT GCTTTAATGG GTAAAATCGC TGACCAATTT
GGCCGACGAA GAATGTTGAT GCTCGATATG TATCTTTTTT CTATATTTTC TCTTTTGCAA
TTAGCAACAA TGAATCTTGT TATCCTGTTT ATCTTACGGA TTTTAATCGG TTTAATGATT
GCTATTGACT ATACTGTTGG GAATGCTCTA TTGGTAGAAT GGTTACCAGT AAAAGAAAGC
GGCCGCCTAC AGAGCCAACT AATCGTTTAC TGGACAATTG GCTTTATTAC TTCATACATT
GCAGGAATTT TAATAACAGG GTTTGGCACT CATAATTGGC AAGTTATCCT TGCATCAAGT
GTCGTTCCAG GACTGATGGC TGCAATCTAT CGGTCAATCT TCCGGATTCC GGCATCCCCG
AGCTGGTTAG CAAGTCAAGG TAAGAATAAA ACTGCTCAAA AACTAATTCA AAAACACCTT
GGGAAAAAAT GGGGATTATC ATTAAAACAA ATTCGTAGTA AAAAACCAAA AGCTGTCTCT
CTTAAAACCC TCTTTAATCC CCCTTATCGC CGAAAAACCA TTGTTGGTGG CTTATTCTAT
GCTTGTCAGG CATTTTCATT TTTCGGTATC AGTATCTTCT TACCAATTCT CCTAAAAAGT
ATGGATCTTG GTAATAACAA CCTCTCTGGG ATTATCTATA ATAGTTGCGT CCTTATCGGC
GTAATTTTCG GTAGTTTAAT CTTCAAGATT CTTAGCAGGC GGATGTTTTT GGTAAGAACA
TTTTTCCTTT CAGCAGCAGC CCTTATCTTA TTAATAATTG GCAATAACTT TTCATCTTTC
TTCCAAATTA GCGTTTTTGC GATCTTTGCG ATAGTCTTAT CTTCAGGACT TGTCCTTGAT
TATCCATATC CAACAGAACT ATTTGATGTT AAGGTTCGAG CCAGTGGAGT TGGTACTTGT
ATCACTATCA GTCGTTTTGG GGCTGCTAGT GGAACATTCT TATTACCAAT CTTAACTCAT
CTTGGCGGTC CCATTTTAGC AATGCTAGTT TGTACTCTTG TTTTACTTAT AGGTGGTACT
ATCTGTCTTT TATGGGCACC TGAAACTTCA CCAAAATATA TTTAA
|
|---|
| Protein sequence | MEYTKKNYKK APLSSIHFRI YFALALGQIA CGFALGISGT ALSQATDYIN IPDFWVGLIG
AGSLIGLAGS ALMGKIADQF GRRRMLMLDM YLFSIFSLLQ LATMNLVILF ILRILIGLMI
AIDYTVGNAL LVEWLPVKES GRLQSQLIVY WTIGFITSYI AGILITGFGT HNWQVILASS
VVPGLMAAIY RSIFRIPASP SWLASQGKNK TAQKLIQKHL GKKWGLSLKQ IRSKKPKAVS
LKTLFNPPYR RKTIVGGLFY ACQAFSFFGI SIFLPILLKS MDLGNNNLSG IIYNSCVLIG
VIFGSLIFKI LSRRMFLVRT FFLSAAALIL LIIGNNFSSF FQISVFAIFA IVLSSGLVLD
YPYPTELFDV KVRASGVGTC ITISRFGAAS GTFLLPILTH LGGPILAMLV CTLVLLIGGT
ICLLWAPETS PKYI
|
|---|
| |