| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1246 |
|---|
| Symbol | |
|---|
| ID | 5188382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1290980 |
|---|
| End bp | 1291810 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640591086 |
|---|
| Product | formamidopyrimidine-DNA glycosylase |
|---|
| Protein accession | YP_001271840 |
|---|
| Protein GI | 148544470 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000322623 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAT TACCAGAAGT TGAAACTGTT CGCCGCGGTT TGCTGAAGAT TGCCGCTAAG
CGTAAAATTA ACGCGATCGA TGTTTATTAT GGTAAAACGA TTACCAATGA CGTTGAAGAT
TTTCGGCAGG CGTTGATTGG CCAGACGATT GAAAATATTG ATCGGCGAGG AAAATATCTT
CTTTTTCGTT TCACTAATGA TTTGACGATG ATTTCACATC TTCGTATGGA AGGAAGATAT
TACAACCAAC CGATTGGCGG ACCAATTGAT AAACATACCC ATGTTGTCTT TGAATTTACA
GATGGTACGG AATTATGTTA CCAAGACACC CGTAAATTTG GTCGGATGAC ATTGGTAAAA
ACCGGTGATG AGATGAATGT CGGTGGATTG AAGACGATTG GCCCTGAACC GACAGAAGAC
GCCTTTACCT TGCCATACTT TACAACTGAA TTAAAAAAGA GTCGGGGAAA GATTAAGCCA
TTCTTGCTCA ATCAGCGTCA TGTCGCCGGT CTGGGTAACA TTTACGTTGA TGAGGTACTA
TGGATGACGG GGATAAATCC GGAGCAACCA GCCAATACTT TAACAGCTAA CCAGATTGCT
GAATTACGGG AAAATATCAT CAAAGAATTG GCGACAGCGA TTAAGTACAA GGGAACCACT
GTGCATAGTT TTACGAATGC ATTTGGTGAT GCTGGTGCTT TTCAAGATCG CTTAAAAGCT
TATGGTCATG CGGGGGATGA ATGTCCGCGT TGTGGCACAA AAATGGTTAA AATTAAGGTT
GCTGAACGCG GAACGACCTT TTGTCCCCAC TGTCAAGTAT TGAAGGAATA G
|
|---|
| Protein sequence | MPELPEVETV RRGLLKIAAK RKINAIDVYY GKTITNDVED FRQALIGQTI ENIDRRGKYL
LFRFTNDLTM ISHLRMEGRY YNQPIGGPID KHTHVVFEFT DGTELCYQDT RKFGRMTLVK
TGDEMNVGGL KTIGPEPTED AFTLPYFTTE LKKSRGKIKP FLLNQRHVAG LGNIYVDEVL
WMTGINPEQP ANTLTANQIA ELRENIIKEL ATAIKYKGTT VHSFTNAFGD AGAFQDRLKA
YGHAGDECPR CGTKMVKIKV AERGTTFCPH CQVLKE
|
|---|
| |