| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1181 |
|---|
| Symbol | |
|---|
| ID | 5188222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1235003 |
|---|
| End bp | 1235875 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640591020 |
|---|
| Product | farnesyl-diphosphate synthase |
|---|
| Protein accession | YP_001271775 |
|---|
| Protein GI | 148544405 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00529094 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACAC CATTGCCGAT TTTAAAAGAA CAGATTGAAA ACTATCTCAG CAAGTCACTG
GCCGCAGATG TTGATCAGGC AACTTTAAGG GATGCCATGA ATTATTCCCT AATGGCTGGG
GGCAAACGGC TGCGTCCAGC ATTGACGCTT GCAACGATTG AGATGCTGGG TGGCACGCTT
AATGATGATC TGCTACGTGC GGCTTCTGCA TTGGAATTGC TTCATACATA TTCATTAATC
CACGATGACC TTCCAGCGAT GGATAATGAT GATCTACGCC GCGGAAAACC AACTAATCAC
TGTAAATTTG GAGCGGGCAT GGCAACTTTA GCAGGAGATG GATTATTGAC GATGGCCTTT
CAGTGGGTTG CCGATAATCA CCTTCCAGCT AATATTCGGA GCCAATTAAC CCTTGAACTT
GCAAAAGCCG CGGGACCATC TGGAATGGTT GCTGGTCAGG CGCGGGATAT TGAAGGTGAA
CACCAACATC TAACTTTAAA CCAATTGAGA TACTTGCACC GTCAAAAAAC GGGGGAATTG
ATTCGCTATG CTGTTTTGGC AGGTGGGATT ATGATGGATC AATCTGCTGA AATCAAACAA
GAGCTAGCAG CATTTGGTGA AAACTACGGG TTAGCATTTC AAATCTATGA TGATTTAATG
GATGTCCTCA GTACTACTGA AGAGATGGGA AAAGCTGTTC ACAAAGATGC TGATGAGCAA
AAAAATACTT ATCCAGGATT GCTCGGTGTA GATGGCGCAA AGGAGCAGCT ACAGATAGCT
TTAGCGGCTG CTGGCCAAAA TCAAAAGAAT CTTGAAAAGC TTACTGGCAA GTCGTTTGCT
GGTTATGATG ACTTTTTAGC ATATTTTAAA TAA
|
|---|
| Protein sequence | MSTPLPILKE QIENYLSKSL AADVDQATLR DAMNYSLMAG GKRLRPALTL ATIEMLGGTL
NDDLLRAASA LELLHTYSLI HDDLPAMDND DLRRGKPTNH CKFGAGMATL AGDGLLTMAF
QWVADNHLPA NIRSQLTLEL AKAAGPSGMV AGQARDIEGE HQHLTLNQLR YLHRQKTGEL
IRYAVLAGGI MMDQSAEIKQ ELAAFGENYG LAFQIYDDLM DVLSTTEEMG KAVHKDADEQ
KNTYPGLLGV DGAKEQLQIA LAAAGQNQKN LEKLTGKSFA GYDDFLAYFK
|
|---|
| |