| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1155 |
|---|
| Symbol | |
|---|
| ID | 5188180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1205471 |
|---|
| End bp | 1206916 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640590994 |
|---|
| Product | signal recognition particle subunit FFH/SRP54 (srp54) |
|---|
| Protein accession | YP_001271749 |
|---|
| Protein GI | 148544379 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000000491114 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTTG AAGGTTTAAC AGATCGTCTG CAAAAGGCGA TGGAAAAATT ACGACGCAAA
CCCAAAGTTA CGGAAGCTGA TCTTCGGGAA ACGATGCGTG AGATTCGGCT TGCCCTTTTA
GAAGCCGATG TTAACTTTAA AGTTGTAAAA GACTTTGTAA AGACCGTTCG GGAAAAAGCA
GCCGGGGCGG AAGTATTAAA AGGGTTAAAT CCAGCCCAAC AAATCGTTAA AATTGTTAAT
GATGAATTGA CAAAACTGAT GGGGGAAGAA GCGGTTCCGC TTAACAAAGC ACCGCATATT
CCAACTGTTA TCATGATGGT TGGTCTTCAA GGGGCAGGTA AGACGACCAC TGCCGGTAAA
TTGGCATTAC GATTAAAGAA TGAAAATCAT GCGCGGCCAA TGTTTATTGC GGCCGACGTT
TACCGTCCCG CCGCTATTAC GCAGTTACAA CAAGTTGCTG ATCAGATTGA TGTTCCTGTT
TTTGAAAAGG GGACAGACGT TGATCCGGTA GAAATTGTTC GCGAAGGGAT GGAAGTAGCC
CAAAAAAATC ATAATGATTA TGTCATTATT GATACTGCTG GTCGGCTTCA GATTGATGAA
CAATTGATGG ATGAGCTTGC AAACATTAAA GAGCTAGTAA ATCCAAATGA AATTTTGCTT
GTTATTGATT CGATGACTGG TCAAAACGCA GTTAATACGG CTCAAGGATT CGATGATAAG
CTTGATATCA CCGGGGTTAT CTTAACCAAG TTAGATGGTG ATACTCGTGG TGGGGCTGCC
ATGTCAATCC GGGCAGTCAC AGGTAAGCCA ATTAAGTTTG TCGGTGAAGG GGAAAAGATG
GAGGATCTTG ATGTCTTCCA CCCTGACCGG ATGGCTTCAC GGATTTTGGG TATGGGGGAC
ATGATGACCC TAATTGAAAA GGCCCAAAAG AATTTTGATG AAGAACAAGC CCAAGAAACA
ATGGATAAAA TGCGTGAAAA CACATTTGAC TATAATGATT TCTTGGCACA AATGGATCAG
GTTACCAAGA TGGGACCGTT GGAAAACATT ATTAAGATGA TGCCGGGGAT GGCTAATAAC
CCTGCCTTGA AGAATCTTAA TTTGGATCCT AAGCAATTTG CTCATATCCG GGCTATTGTT
CTTTCAATGA CGCCAGAAGA ACGTGAAAAC CCTGATATAA TGAATCCTAG TCGTCGTCGT
CGTTTAGCAG CTGGTGCGGG ACGGCCAATT GTTGAAGTTA ACCGGATGAT TAAGCAATTT
AATCAAATGC GTAAGATGAT GAAGCAGGTT ACAAACGGTA ACTTCAATGG AATGCAAAAT
ATGTTTGGCG GACAAATGCC AGGTGGCAAG ATGGGACAAA TGGCAATGAA CCGCATGGCG
CGAAAAATGA AAAAAGACAA GCAAAAGCGC ATTAAAAAGC TTCGCAAATT ACGAAAGAAA
AAATAA
|
|---|
| Protein sequence | MAFEGLTDRL QKAMEKLRRK PKVTEADLRE TMREIRLALL EADVNFKVVK DFVKTVREKA
AGAEVLKGLN PAQQIVKIVN DELTKLMGEE AVPLNKAPHI PTVIMMVGLQ GAGKTTTAGK
LALRLKNENH ARPMFIAADV YRPAAITQLQ QVADQIDVPV FEKGTDVDPV EIVREGMEVA
QKNHNDYVII DTAGRLQIDE QLMDELANIK ELVNPNEILL VIDSMTGQNA VNTAQGFDDK
LDITGVILTK LDGDTRGGAA MSIRAVTGKP IKFVGEGEKM EDLDVFHPDR MASRILGMGD
MMTLIEKAQK NFDEEQAQET MDKMRENTFD YNDFLAQMDQ VTKMGPLENI IKMMPGMANN
PALKNLNLDP KQFAHIRAIV LSMTPEEREN PDIMNPSRRR RLAAGAGRPI VEVNRMIKQF
NQMRKMMKQV TNGNFNGMQN MFGGQMPGGK MGQMAMNRMA RKMKKDKQKR IKKLRKLRKK
K
|
|---|
| |