| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0649 |
|---|
| Symbol | |
|---|
| ID | 5189612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 716610 |
|---|
| End bp | 718391 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640590482 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001271251 |
|---|
| Protein GI | 148543881 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily |
|---|
| TIGRFAM ID | [TIGR00649] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000403625 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATA ATATTAAAAT TATTCCTTTT GGTGGTGTAC GCGAAAATGG TAAAAATATG
TACGCCGTTG AGATTGAAGA CCAAATTTTC ATTTTGGATA CGGGGTTAAA GTATCCGGAA
AATGAATTAA TGGGAATCGA TGTTGTCATT CCTGACTGGG AATACCTTCG TGAACATAAG
GACAAGATAG TCGGAGTATT CTTAACACAT GGACATGCAG ATTCAATTGG GGCACTTCCG
TATTTCTTGA TGGACTTTAA TGTTCCGGTA TTTGGAAGCG AGATGACGAT TGCCTTAGCA
AAACTGGCAG TTAAAAACCA TAAGGAAGTT AAGAAATTTA ATGATTTTCA TGTTGTTGAT
GCTTCAACAG CAATTGATTT TAATGATGTT ACAGTTTCGT TCTTCCAAAC GACCCATACT
ATTCCTGAAA CTTTAGGGGT TGTTTTAGAA ACTAAAGCAG GAAATATTGT TTACACTGGT
GATTTTAAAT TCGATCAGAC AGCTAAAAAA GGTTATCAAA CAGACCTTGC TCGTTTAGCA
GAAATTGGAT CACAAGGTGT ATTAGCACTT TTAAGTGATT CTGCTGGTGC TGGAATTACG
GGTGCGTCTG CTCGTGAGCA AGATATTGGA GACTACATTA AAGAAACATT TAAATATCAA
AACGGTCGGA TTATTGTTGC TAGTGTAGCT TCAAATATTA TGCGCGTACA GCAGATTATC
AATGCTGCTG TTGCCGTTGG TCGGAAGATT GTTTTATCTG GTAAAGATAT TGAGCAAATC
ATCGATACAG CAATGTCTTT GGGAAAGCTG CACTTACCAG ATGACTTATT CATTAGTCGC
AAGGAAGCAG AAAAACTTGA ACCAAATCAA GTTGTTATTT TGGAAACTGG TAAAATGGGC
GAACCGATTA AGTCATTACA GCAAATTGCA AACGGTGATA ATCCTAATTT ACAATTAACG
AGTACCGATC TTGTCTTTGT TACTACTACT CCTTCTTATG CGCAGGAGAC TGAGGTACAA
AAGACAAAAG ATATGATTTA TCGTACGGGA GCAGAAGTTA AGTTTATTTC TGATGATTTG
AATCCTTCTG GGCATGCTAA CCAAAATGAT GAACAGTTAA TGTTGAACTT CATGAAACCC
AAGTTCTTCA TTCCAATTCA AGGCGAATAC CGTCTGTTAG ATCGTCATGC AGAATTAGCA
GAAGAAGTAG GAATTCCAAA AGAAAATATC TTCCTCGTTA ATAAGGGTGA TGTTCTAACC
TACAAAAATG GTAAATTCCA TGTTGGAGAA CATATTGATG TAAGCAATAC TATGATTGAC
GGGACAGGTG TCGGTGATAT CGGTAATATT GTTTTACGAG ATCGGCGCGT CCTATCAGAG
GATGGGATTT TTGTTGTGGT GGCAACTATT GATCGGAAAA AGAAAAAGAT CGTTGCTCGA
CCACAAATTA CGTCACGAGG ATTCGTGTTT GTAAAGACTA ACCGTCAACT AATGCAACAG
AGTGCTGACT TAGTTGAAAA GATTGTTCAA GAAAATCTAG ATCAAAAGGA ATTTGATTGG
AGTCACTTGA AACAAGATGT TCGCGATAAA TTAAACCGAT TCTTGTTTGA TCAAACTAAA
CGGCATCCAG TTATTTTGCC AGTTATTATG GAGATTAATC AACACCAAAA GAAGATTAAA
AACAATGTTG AGAAGAAAGA AGAGAAATCT GCAAAGTCAC GTTCAACGAA AGAACATCAT
CGTGGTCGTG GTAAAAAACG AATGGCAAAA GAAAAGAAGT AG
|
|---|
| Protein sequence | MDNNIKIIPF GGVRENGKNM YAVEIEDQIF ILDTGLKYPE NELMGIDVVI PDWEYLREHK
DKIVGVFLTH GHADSIGALP YFLMDFNVPV FGSEMTIALA KLAVKNHKEV KKFNDFHVVD
ASTAIDFNDV TVSFFQTTHT IPETLGVVLE TKAGNIVYTG DFKFDQTAKK GYQTDLARLA
EIGSQGVLAL LSDSAGAGIT GASAREQDIG DYIKETFKYQ NGRIIVASVA SNIMRVQQII
NAAVAVGRKI VLSGKDIEQI IDTAMSLGKL HLPDDLFISR KEAEKLEPNQ VVILETGKMG
EPIKSLQQIA NGDNPNLQLT STDLVFVTTT PSYAQETEVQ KTKDMIYRTG AEVKFISDDL
NPSGHANQND EQLMLNFMKP KFFIPIQGEY RLLDRHAELA EEVGIPKENI FLVNKGDVLT
YKNGKFHVGE HIDVSNTMID GTGVGDIGNI VLRDRRVLSE DGIFVVVATI DRKKKKIVAR
PQITSRGFVF VKTNRQLMQQ SADLVEKIVQ ENLDQKEFDW SHLKQDVRDK LNRFLFDQTK
RHPVILPVIM EINQHQKKIK NNVEKKEEKS AKSRSTKEHH RGRGKKRMAK EKK
|
|---|
| |