| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0643 |
|---|
| Symbol | |
|---|
| ID | 5189385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 711090 |
|---|
| End bp | 711722 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640590476 |
|---|
| Product | helix-hairpin-helix repeat-containing competence protein ComEA |
|---|
| Protein accession | YP_001271245 |
|---|
| Protein GI | 148543875 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0000019703 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAT TATCAGAATT ATGGATAAAA TATCGAGTAC AAGTGCTGAT GATAGTGATT
GCTGCAGTGG TTGGGGGATA TTGGATACTT AATAAAAACA ATAACGATGC TTTAATTTCA
AATACTAATG CTGTTTTAAC AAGTAGCGAA ACGGGAAGCA GTTTAACTTC TACCACTACG
ATGAAAGGGA CCGTTGCCAT TGATATAAAA GGTGCCGTAA AAATGCCCGG AGTTTATGAG
TTGAAAGCAG ATGATCGTGT GAACGAAGCC TTGAAGGCGG CAGGTGGACC ACTACCCAGT
GCAGATTTGC GTCAAGTGAA TCTTGCTAAA CAATTAACAG ATCAGCAAAT GATCTATATT
CCGCTTCAAG GCGAAACGCC GGTAGCTTCC AGCAGTACAG AACCATCAGC AGCTAATAAT
GAAAATGGCA ACGATAATTC TGCAAAGATA AATCTAAATA CGGCAACCAA AGAACAACTA
TGTCAAATAA CGGGAATTGG CGATAAAAAA GCAGACTTGA TATTACAATA CCGACAAGAA
CACGGTCAGT TTAAGAGTAT TGACGAACTT AAAGAAATAA ATGGCTTTGG CGAAAAAACT
GTTGCTAAAC TAAAAGATCA CCTATCTATC TAG
|
|---|
| Protein sequence | MQQLSELWIK YRVQVLMIVI AAVVGGYWIL NKNNNDALIS NTNAVLTSSE TGSSLTSTTT
MKGTVAIDIK GAVKMPGVYE LKADDRVNEA LKAAGGPLPS ADLRQVNLAK QLTDQQMIYI
PLQGETPVAS SSTEPSAANN ENGNDNSAKI NLNTATKEQL CQITGIGDKK ADLILQYRQE
HGQFKSIDEL KEINGFGEKT VAKLKDHLSI
|
|---|
| |