Gene Lreu_0085 details

Gene Information

• Locus tag: Lreu_0085
• Symbol: carB
• ID: 5189817
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus reuteri DSM 20016
• Kingdom: Bacteria
• Replicon accession: NC_009513
• Strand: -
• Start bp: 102442
• End bp: 105612
• Gene Length: 3171 bp
• Protein Length: 1056 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640589880
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_001270697
• Protein GI: 148543327
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ); [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00260745
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTAAAC GAACTGATAT TCATAAAATT CTTGTCATCG GGTCTGGTCC TATTATTATT 
GGCCAAGCAG CTGAATTTGA TTATTCTGGC ACGCAGGCTT GTCTTGCCCT CCGCGAAGAA 
GGATACGAAA CCATCCTTGT TAATTCTAAT CCAGCAACAA TCATGACTGA TAAGGAAATT 
GCTGATCATG TCTACATCGA ACCATTAACG GTTGAATCCC TCTCTCGAAT TATCCGTCAA 
GAATATCCCG ATGCAATTTT ACCAACCCTT GGCGGACAAA TCGGCCTCAA CTTAGCTGTC 
TCTTTATCTG AAACTGGTCT CCTTGACGAA TTAGGAATTG AACTTCTTGG AACTAAGCTG 
GATTCGATTG ATGAAGCAGA AGACCGCGAA AAATTTAAGG AATTAATGAA TGAACTTGGT 
GAACCTGTTC CCGCCTCGCA GACAGTTAAT ACTGTTGATG AAGCAGTCGA ATTCGCACAC 
CAATGTGGAT ATCCAGTAAT CGTCCGTCCA GCCTTTACCA TGGGTGGTAC AGGCGGTGGG 
ATCTGCCATA ATGATGCAGA AATGCGTACC GTTGCCAAGA ATGGCTTGGA ATTATCCCCC 
GTCACCCAAT GTTTAATTGA AAAGTCAATC GCTGGTTATA AGGAAATCGA GTTTGAAGTA 
ATGCGGGATG CAGCTGACAA TGTAATGGTC GTTTGTTGTA TGGAAAACTT TGACCCAGTG 
GGAATTCATA CCGGTGACTC CATCGTATTT GCCCCTAATC AGACCCTTAG TGATCGCGAA 
TACCAGATGC TCCGTGATTG CGCGCTCAAG CTGATCCGTG CCCTCAAAAT CGAAGGGGGA 
TGTAACGTCC AACTGGCCCT TGATCCGCAA AGTTTCCAGT ATAACGTTAT CGAAGTTAAT 
CCACGGGTTT CCCGTTCGTC TGCTCTTGCT TCGAAGGCAA CGGGTTATCC AATCGCTAAA 
ATGGCTGCTA AAATTGCGGT TGGCCTTACC CTCGATGAAA TTAAGAATCC CGTTACCAAG 
ACGACTTTTG CTGAATTTGA ACCGGCACTT GACTATGTTG TCTGCAAAAT TCCCCGCTGG 
CCGTTTGATA AGTTTACTCA GGCTGATCGA CACCTGGGCA GCCAGATGAA AGCCACGGGA 
GAAGTAATGG CAATTGGTCG GACAGCTGAG GAAGCTCTCC ATAAGGCTGT CCGCTCACTT 
GAAATTGATG AAAAAGACCT CTTTTCAGCA GAAGCTCATC ATGCGCCAAC AGATATGCTT 
GAAAAGAAGT TACGTTATCC CCAAGATGAT CGGTTATTTT ATTTAGCAGA AACATTTCGG 
CGTGGGTACT CCCTTCAGCA AACTCATGAC TTAACTAAGA TTTCCCCTTA TTTCCTCGAT 
ATCGTCAAAC ACTTGGTGGA ACTTGAAGAC GATCTTAGTA CCAAGCCATT TGATGTGGAA 
ACACTGATAA CCAGCAAAAA ATACGGCTTT AGCGATGCAA CAATTGCCCG CCTTTGGCAT 
ACTTCCTCAC AAGAAGTTCG GAAATTCCGA AAACAAAATG AAGTTCTCCC CGTATATAAG 
ATGATCGATA CCTGTGCTGC TGAATTTGCT TCTTCAACCC CTTATTTCTA CAGCGCATAT 
GACCATGAAA ATGAAAGCCA ACGGACAAAG AAGCCATCTA TCCTTGTCCT TGGCTCAGGG 
CCAATCCGGA TCGGTCAAGG AGTTGAGTTT GACTATGCGA CCGTTCATAG CGTTAAGGCA 
ATTCAACGGG CTGGCTATGA AGCAATTGTC ATCAATTCGA ATCCAGAAAC TGTTTCGACA 
GATTTCTCGG TTTCAGATAA ACTCTATTTC GAGCCCCTCA CGCTTGAAGA TGTCCTAAAC 
GTGATTGATC TCGAACAACC AGTAGGCGTG ATCGTGCAAT TTGGTGGACA AACAGCGATT 
AATTTAGCAG AAGGTCTTGC TAAAAATGGG GTTAATATTC TTGGAACAAC CGTTGACGAT 
CTTGATGCCG CTGAAGATCG AGAAGTATTC GATCAAGTTA TCACTGATCT AAATCTTAAG 
CAGCCAATCG GTTTAACCGC AACTACTCAC TCTGCCGTTA TCAAAGCGGC TGAAAAAATC 
GGCTATCCCG TTCTTGTTCG TCCAAGTTAT GTTCTCGGTG GTAAGGCCAT GGAGACTGTT 
TATAATCAAG AAGAACTGCA ACAATACCTT CAACAAAACG CCTCCATTAC TGCTGATCAC 
CCTATTTTAA TCGATGCCTA CCTTGAAGGA CGGGAATGTG AAGTAGACGC AATTTGCGAT 
GGAAAGGACG TCCTTATCCC TGGAATAATG GAACATATTG AACATGCGGG CGTTCACTCA 
GGAGATTCAA TGGCAGTTTA TCCCCCACAA CATTTTAATG ATGACATTAA ACGACAAATC 
GTTACTGCTA CCGAAAAATT AGCAGTTGCG CTTAAATGTA TCGGCATCAT GAACATCCAA 
TTTATTGTTC ATAATCATGA GGTGTACATC CTTGAAGTTA ATCCGCGAGC TAGTCGAACA 
GTGCCATTCC TCAGCAAGAT TACGGGAATC GAAATGGCCC AAGTCGCTAC CAGAGTTATC 
CTTGGCCAGT CCCTTGCTGA TCAAGGCTTT ACTAACGGTC TTTATCCAGA ACCACAAACC 
ATTCATGTTA AAGCTCCTGT CTTTAGTTTT AACAAGTTAG CGAACGTTGA TTCTTACCTC 
AGTCCAGAAA TGAAATCGAC AGGCGAAGTG ATGGGGACAG ATACCACCTA TGAAAAAGCA 
CTTCATAAAG CCTTTTCTGG CGCACATATT CAAGTCCCTA ACGATGGTAA AATTCTCTTT 
ACGATTGAAA ACGGGGATGA AAAAGAAGTT CTCCCACTAG CAAAACGGTT TGCTCAGATT 
GGCTACCAAG TTTTCACTAC CCCGCAAACA GCATCGCACT TTAAAGATAA CGGAATTCAC 
ATTCATCAAG AAATATCCAA TATCGATGAA CTCAACTGCC TCCTAAAAGC CGGGCAGATC 
GACCTTGTTA TCAACACCAT GCGCCATGAT TATGAACAAG ATTCACTTGG CTTTCAGATC 
CGCCAAAGTA CAATCGCGCA AAACGTACCA TTGATGACCT CACTTGATAC AGTCAATGCG 
TTGCTGCGCG TTAAAGAAGA TCAATCTTTG GAAGCAATAA CAATCAAATA A 

 

Protein sequence

MPKRTDIHKI LVIGSGPIII GQAAEFDYSG TQACLALREE GYETILVNSN PATIMTDKEI 
ADHVYIEPLT VESLSRIIRQ EYPDAILPTL GGQIGLNLAV SLSETGLLDE LGIELLGTKL 
DSIDEAEDRE KFKELMNELG EPVPASQTVN TVDEAVEFAH QCGYPVIVRP AFTMGGTGGG 
ICHNDAEMRT VAKNGLELSP VTQCLIEKSI AGYKEIEFEV MRDAADNVMV VCCMENFDPV 
GIHTGDSIVF APNQTLSDRE YQMLRDCALK LIRALKIEGG CNVQLALDPQ SFQYNVIEVN 
PRVSRSSALA SKATGYPIAK MAAKIAVGLT LDEIKNPVTK TTFAEFEPAL DYVVCKIPRW 
PFDKFTQADR HLGSQMKATG EVMAIGRTAE EALHKAVRSL EIDEKDLFSA EAHHAPTDML 
EKKLRYPQDD RLFYLAETFR RGYSLQQTHD LTKISPYFLD IVKHLVELED DLSTKPFDVE 
TLITSKKYGF SDATIARLWH TSSQEVRKFR KQNEVLPVYK MIDTCAAEFA SSTPYFYSAY 
DHENESQRTK KPSILVLGSG PIRIGQGVEF DYATVHSVKA IQRAGYEAIV INSNPETVST 
DFSVSDKLYF EPLTLEDVLN VIDLEQPVGV IVQFGGQTAI NLAEGLAKNG VNILGTTVDD 
LDAAEDREVF DQVITDLNLK QPIGLTATTH SAVIKAAEKI GYPVLVRPSY VLGGKAMETV 
YNQEELQQYL QQNASITADH PILIDAYLEG RECEVDAICD GKDVLIPGIM EHIEHAGVHS 
GDSMAVYPPQ HFNDDIKRQI VTATEKLAVA LKCIGIMNIQ FIVHNHEVYI LEVNPRASRT 
VPFLSKITGI EMAQVATRVI LGQSLADQGF TNGLYPEPQT IHVKAPVFSF NKLANVDSYL 
SPEMKSTGEV MGTDTTYEKA LHKAFSGAHI QVPNDGKILF TIENGDEKEV LPLAKRFAQI 
GYQVFTTPQT ASHFKDNGIH IHQEISNIDE LNCLLKAGQI DLVINTMRHD YEQDSLGFQI 
RQSTIAQNVP LMTSLDTVNA LLRVKEDQSL EAITIK