| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0049 |
|---|
| Symbol | |
|---|
| ID | 5189386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 56075 |
|---|
| End bp | 59857 |
|---|
| Gene Length | 3783 bp |
|---|
| Protein Length | 1260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640589845 |
|---|
| Product | DNA helicase/exodeoxyribonuclease V, subunit B |
|---|
| Protein accession | YP_001270662 |
|---|
| Protein GI | 148543292 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3857] ATP-dependent nuclease, subunit B |
|---|
| TIGRFAM ID | [TIGR02773] ATP-dependent nuclease subunit B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAACAC TGGGATTTGT TTTAGGAACA GCAGCGATGG ATCATCAGCA AGTATTGATT
GATCAATTAG TTGACCAGGT AAAGAATACA CCTGCTGATG ACACCTTTTA TTATTTGGTG
CCCAACCATA TTAAGTTTGA AACTGAAATT AATGTTCTTG CTGGTCTTCG TGATCGCCAA
GGACTTAGTG GGAGTGATCG GTTCGCCTCT TCACGCGTAC AGGTACTTTC ATTTAGCCGG
CTTGCTTGGT ACCTTTTACG AGATACTCCA GCTTTTCAAA AACAACACCT TTCTAAAATT
GGGATGGCGA TGCTAACTTC TCAAGTTGTT CAAGAACAGG CAAGTGATCT CCGTTTATAT
GCGAGCGAAG TAAAACAACC TGGCTTTATT CAAAAGATGA CAGCTCAGCT TGAAGAATTA
AAAAATGCCA ACATAACCGC CGATGACTTA ACTGATATTA TTTACCGGGT GAAGTCCGCG
AATGATCCAG CAGCTAATCA GGCGTGGCTC GCTAAAATGT ATGATGTTGA AACTATATAT
CATGCTTATG AAGCCCGGTT GCGTGACCGG TACATTGGTA ATAGTGAGTT ATACCGGCAA
TTAGTGTCTT ACCTTCAAAA ATCACCAGAA GTCGCTAAGA TGCACTTCTT TATTGACCGT
TTTGCTCAGT TTACTGCAAA TGAACAACAA GTAGTTGATG CATTAATTAC TAATGCCGCA
TCGACAACTA TTTCTTTAAC CCTTGATCGT GGATACCCAG ACCAGAATCA TCCAAATCCC
CAGGAACTTC CTCCTAAAAA TAATTTATTC TATTCCTCCG CGATGCAATT TCACCGTTTG
TGGAAATTTG GTCAAATGCA TCAAAAAGAA GTGAAGGTTT TGCAAAATGT AGCGTTTGCG
ACAACTCCTC GTGTTGATGC GGAATTACAA CAAGTTGATT CGTATTTTAA GCGTTATGCA
AGTGAACCAA TTGGCCCCGG CGAGCGAGAA GAGCTTCTTG ATCCCCAAAA CATTCAATTT
ATGACAACCA CTAATCGGAT GACTGAATTA AATAATGTGG CTACCCAGAT TCGCCAATTA
GTTGCTAGTG GTAAATATCG TTATCGTGAC TTCCTTATCC TTAGTCGCCA CCTTGACGGC
TATCAAACAA TGATTGAACC GGTTTTTGCG GCACATAATA TTCCAGTTTT TAATGATCAT
GAACGCTTGA TGGATAATCA TCCGCTAGTA ACGCTCCTCA CAACATTATT AGAATTACCG
CAGCGAGGCT ATCGAACAGC AGATATCATC CAATTGCTGA AGACATGGTT ACTTGTTCCA
CGGACAGGCA CTGGTGATCT GATGGGGCTA AGTGATTTCC AAGCAGCAGT TTTTACTACT
GAGAATTGGT GCCTTAAGCA GGCAATTGAG GGAAAAAATG CTTGGACAAC TAATGATCCA
GAAAAGATTA AGCAATTATG GCAGGCGCCC GGAACGAACC TGACAGATCC AAAGTATGAA
CAGTCACGTT TAGAAAAATT AAATGACCAG TTAGCCCTTG TAAAAGATTT TGTTGCAAAC
CACTTACTGC CAGTTTTCGA CCAGTTTAAA CAAGCACAAA CAGGACAAGA ACTTGCCACT
GCGTTATACC AGTTCTTAGC TGCCATGGGA GTTACAGACC GGTTATATGC TTGGCAGCAA
TACCAGAGTA CCCGAGATTT AGATCTCGCG CGCCAACCAC AACAAGTCTG GACTACCTTT
TGCCAAATTC TCCAAGAATA TGTGGAAATC TTGGGCCAAC AAGAACTACG AGATGGAACT
AATGAGGTCC TTGCAGATTT CAGTGAATTG CTCCAGGCAG GTTTTGCGGC GGCCCAGTAT
TCTCAGATTC CGGCAACGTT AGACCAAGTG GTAGTCTCTG AAACTGGAAT TGTCCAAAGT
GAAAACCGAA AAGTAGTTTT TATGATTGGG TCAACTGATG ATGTGATGCC TGAGATGCAA
GAAAGTGATA GTTTGCTAAC GGACCAAGAT AAGGATATTT TGAGTGCTTA TCTTGATGAA
GATTTCCAAT ACCTTCCTGG AACGGCAATT GACCAACTGA TTGATGAGCC ATTTGTCCAC
TATACTGGCT TTATGAACGC TAAGGAACAG TTGATTTTCT CGGCACCGCA ATCAGATAGT
GATGATAAGG AACTCAGTAT ATCGCCATAT ATGCACGATA TGGCTCGCTA CTTTGGTCAA
CCGGTTCGTG AATATCCATT AGCTACTAGC AAGGCCGGAC AAGACAATGC TATTGATTTT
GTTAGTGCCC CGCTTGCAAC AATAAACCGG TTAGTTGAAG TTAGCCGACA AATTCGTGAT
GAGCAAGGGG TTGGCATTGA TCGTCAACCG GTCATGCCTG TTGGATGGCA AACAGTTGCT
GAATCGTTGG TTAAGTTAGC TAAGCAATGG CAACAATCAG CGGATGCTAA GGTTCAAGCA
GAAGGAATAT CACTAGGTCA GCGTCTATCT TTAGTTGCTG CTGGTTTCCA TTATCAAAAT
AAGATTGATT CCCTGGGAAA TAAATTGGCT CAGGCACTTT ATCTCCGGGC AGCTCCAGAT
GATGAGCGCG GGCGGGTATT ATATGCCTCG ATTTCGCAGT TGCAAGATTT TTATATTAAT
CAGTACGAAT ATTTCCTTAA GTATGGCTTG AGGTTGCAAA AACGAGATGA GTTAACCTTA
TCTAATGACC GTATCGGTAC CTTCTTCCAT AAAGCAATGG AGACTTTTGT TACAACAATT
CGAGAAAATA ATTTGTCATT TGCAGACCTT GCCCACAAAG ATAATCAGAT GCAACGTGAC
CAGCTGATTG ACCATGCATT AGTTACAGCG CAAGAGAATC AGCCAACTTT ATTGCGTCTC
ATTAATTCTT CAGCCCAAGC CCAATTCCAA TATCAGCAAT TAACCGCCAT TGTTAAAACA
ATGTTAATTA CATTATGCCG CCAAGCTGAA TATACCGGCT CGCAGCCAGT AAAAACCGAA
GTTCAGTTTG GAAGAATTGG TAACCAACAG CCGGGCAACC TTGGTTCTCT TGATTATCCG
CTTAAAGATA ATCATCATAT TTATCTGCGG GGACGAATTG ACCGAATCGA TAATCTTAAG
CAAGGAAACA ATAATTTCTT GACGGTCGTT GACTATAAGT CGAGTAATCA TCTTTTTGAC
CTCACTTCGG CTTATTATGG ACTCTCTCTC CAACTTTTAA CCTATCTTAA CGGGTTACAG
GCAAACTTAA CTGAATTGGA AACGAATAAT CCTCGACTGG CAGGGGCATT ATATCTTCGT
TTGAATAATC CGACAATTAA GGCTGCTGAG TTAAAGAAAA GTTCCCTTGA TGATTTGAAA
TTAAAAGAGC ACCAATACAA GGGAATCCTC TTGAATGATC CACAATTATT GCGGGAGTTA
GATAAGAGCT TAGATAAACA AGCATTCTTA TACCCACTTA AGGAATATAA GAATGGAAAA
ATCAAAGCTA ATAAAGAAGC GCTTCTCGTT ACTCCGCAGC AACTTGATTG GCTGCAAAAC
ATGAATAAGG AACTTGTAAT TAATGCGGGT AATCAAATTT TGAGTGGTGA CTTGAAACTG
AATCCTTACC GGTTATTAAC TGGAAGCAAC CGCCGCACAG GACTTGATTA TAGTGACTTT
TTAGATGTAT TTCAGTTTGA TAATATGCTT GACCAGCAAA ACTACCGCGA CTTAAATCCT
AATTTAGCAA AAGAAGCATT TGATAATGTA GTCCAAGACG ATGATGAGGA GGATAAGAAG
TAA
|
|---|
| Protein sequence | MGTLGFVLGT AAMDHQQVLI DQLVDQVKNT PADDTFYYLV PNHIKFETEI NVLAGLRDRQ
GLSGSDRFAS SRVQVLSFSR LAWYLLRDTP AFQKQHLSKI GMAMLTSQVV QEQASDLRLY
ASEVKQPGFI QKMTAQLEEL KNANITADDL TDIIYRVKSA NDPAANQAWL AKMYDVETIY
HAYEARLRDR YIGNSELYRQ LVSYLQKSPE VAKMHFFIDR FAQFTANEQQ VVDALITNAA
STTISLTLDR GYPDQNHPNP QELPPKNNLF YSSAMQFHRL WKFGQMHQKE VKVLQNVAFA
TTPRVDAELQ QVDSYFKRYA SEPIGPGERE ELLDPQNIQF MTTTNRMTEL NNVATQIRQL
VASGKYRYRD FLILSRHLDG YQTMIEPVFA AHNIPVFNDH ERLMDNHPLV TLLTTLLELP
QRGYRTADII QLLKTWLLVP RTGTGDLMGL SDFQAAVFTT ENWCLKQAIE GKNAWTTNDP
EKIKQLWQAP GTNLTDPKYE QSRLEKLNDQ LALVKDFVAN HLLPVFDQFK QAQTGQELAT
ALYQFLAAMG VTDRLYAWQQ YQSTRDLDLA RQPQQVWTTF CQILQEYVEI LGQQELRDGT
NEVLADFSEL LQAGFAAAQY SQIPATLDQV VVSETGIVQS ENRKVVFMIG STDDVMPEMQ
ESDSLLTDQD KDILSAYLDE DFQYLPGTAI DQLIDEPFVH YTGFMNAKEQ LIFSAPQSDS
DDKELSISPY MHDMARYFGQ PVREYPLATS KAGQDNAIDF VSAPLATINR LVEVSRQIRD
EQGVGIDRQP VMPVGWQTVA ESLVKLAKQW QQSADAKVQA EGISLGQRLS LVAAGFHYQN
KIDSLGNKLA QALYLRAAPD DERGRVLYAS ISQLQDFYIN QYEYFLKYGL RLQKRDELTL
SNDRIGTFFH KAMETFVTTI RENNLSFADL AHKDNQMQRD QLIDHALVTA QENQPTLLRL
INSSAQAQFQ YQQLTAIVKT MLITLCRQAE YTGSQPVKTE VQFGRIGNQQ PGNLGSLDYP
LKDNHHIYLR GRIDRIDNLK QGNNNFLTVV DYKSSNHLFD LTSAYYGLSL QLLTYLNGLQ
ANLTELETNN PRLAGALYLR LNNPTIKAAE LKKSSLDDLK LKEHQYKGIL LNDPQLLREL
DKSLDKQAFL YPLKEYKNGK IKANKEALLV TPQQLDWLQN MNKELVINAG NQILSGDLKL
NPYRLLTGSN RRTGLDYSDF LDVFQFDNML DQQNYRDLNP NLAKEAFDNV VQDDDEEDKK
|
|---|
| |