Gene Lreu_0018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLreu_0018 
Symbol 
ID5189516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus reuteri DSM 20016 
KingdomBacteria 
Replicon accessionNC_009513 
Strand
Start bp18960 
End bp20681 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content39% 
IMG OID640589813 
ProductABC transporter related 
Protein accessionYP_001270631 
Protein GI148543261 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAACAGAA ATAAATTTAG TTTTCGGAGT TTCTTTAGTT TAATAAATCA ATTACATCCG 
CGGTATATTA AGCTTTTTGT GGGAATCTTA CTAGGTTTTA TCTCCACGGG TGCTAACCTA
TTTGTTCCTC AACTAGCGCA AAAGCTAATT AATAATTTTA AGAGTATTAG TCCAACGTTG
GCGATTTTAA CAGTTGTAAT TTTTATAGCA GGATTAATTA CGAGTGCGTT ATCAGAGTTA
TTATTAGGAA TTTTTGGTGA AAATGTTGTT TCTAAATTAC GGAAACAATT ATGGCAAAAA
CTACTTAAAA TGCCTGTAAA ATATTTTGAT GATGTTAAAA CAGGTGAAAT CAGTTCACGA
TTAGTTAATG ATACATCACA GGTGAAGGAT TTACTTGCTT CAACATTACC AAATGCAATG
ACATCGCTTT TACAATTCGT TGGTGCACTG GTTATTATGT TAGCAATGGA TTGGCGGATG
ACATTGTTGA TGTTTGTGGC AGTTCCTTTA GTGATTTTAG TCATGCTACC AGTGATGAAT
CAGTCGCGTA AGATTGGTCG GGTTCGGCAA GATGAATTAG CAAAATTTGC TAGTGATTCC
ACCGATGTAT TAGGTGAGGT CCGATTAGTT AAGTCTTCAA ACGGTGAAGA ACATGAACTG
GCAAAGGGAA ATCGCCGCAT CGACAATTTA TATCATGTCG GAAGAAAAGA AGCGTTGATT
AACTCAGTAA CGCAACCAAT TACAAACATG CTCATGATGA TAATGTTTCT TGGGATTCTT
GGTTACGGAG CAATTCGTGT TATGAATGGT GCAATGACAA TGGGCGCCTT AGTTTCGTTT
TTAATGTATC TTTTCCAGAT TATTAGTCCC GTTGTTGTAA TTAGTCAGCT CTTTAATAAT
ATGGCAAAGA CTAGCGGAGC CACGGAACGT ATCCAACAAA TCTTAACTGA ACCAGAAGAA
TTTGCTGCTG ATAAAGCAGA AAAAGATATT GCGAGCGCAC CATTGAAATT TGAGAATGTT
GATTTTGCAT ATGAGGAAGG CAAGCCAGTC TTACGAGATG TTAGTTTTGA AACCAAACCC
AATGCAGTGG TAGCTTTTGC CGGCCCATCT GGTGGAGGAA AGTCAACTAT TTTCTCATTG
ATTGAACGAT TCTATCAGCC AACAGGTGGA AAAATTTTGA TCGGTGAAGA GAATATCGAA
AATGTAGACT TAGCCAAGTG GCGTGAACAA ATTGGTCTCG TAAGTCAAGA TGCCGCGGTA
ATGCCAGGAA CTATTCGTGA TAATTTAACT TATGGGTTAC GAAGAGAAGT CTCGGATGAG
GAACTTTGGG ACGCGTTAAG AATGGCTTAT GCAGATGGTT TTGTCAGTGA AATGGAAGAT
CAGTTAGAAA CTGAAATTGG TGAACGAGGG ATCAAACTTT CTGGAGGACA ACGGCAACGA
ATAGCGATTG CGCGGGCTTT TCTCCGCGAT CCAAAAATCT TAATGCTTGA TGAAGCCACT
GCTAGCTTGG ATGCTGAATC GGAGGCGATG GTTCAAAAAG CATTGGGAGA CTTAATGCAA
GGAAGAACGA CACTAGTAAT TGCGCATCGC TTGAGTACGA TTGTCGATGC CGATAAAATC
TACTTTATCG AAAATGGAAC AGTATCCGGT GCAGGAACCC ATCAAGAATT ATTAAAGACA
ACACCACTAT ATGCACAGTA TGTTAAGGAT CAGTTTAAAT AA
 
Protein sequence
MNRNKFSFRS FFSLINQLHP RYIKLFVGIL LGFISTGANL FVPQLAQKLI NNFKSISPTL 
AILTVVIFIA GLITSALSEL LLGIFGENVV SKLRKQLWQK LLKMPVKYFD DVKTGEISSR
LVNDTSQVKD LLASTLPNAM TSLLQFVGAL VIMLAMDWRM TLLMFVAVPL VILVMLPVMN
QSRKIGRVRQ DELAKFASDS TDVLGEVRLV KSSNGEEHEL AKGNRRIDNL YHVGRKEALI
NSVTQPITNM LMMIMFLGIL GYGAIRVMNG AMTMGALVSF LMYLFQIISP VVVISQLFNN
MAKTSGATER IQQILTEPEE FAADKAEKDI ASAPLKFENV DFAYEEGKPV LRDVSFETKP
NAVVAFAGPS GGGKSTIFSL IERFYQPTGG KILIGEENIE NVDLAKWREQ IGLVSQDAAV
MPGTIRDNLT YGLRREVSDE ELWDALRMAY ADGFVSEMED QLETEIGERG IKLSGGQRQR
IAIARAFLRD PKILMLDEAT ASLDAESEAM VQKALGDLMQ GRTTLVIAHR LSTIVDADKI
YFIENGTVSG AGTHQELLKT TPLYAQYVKD QFK