| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5309 |
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| Symbol | |
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| ID | 5193285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5957278 |
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| End bp | 5958960 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640589792 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_001270611 |
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| Protein GI | 148550509 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.910149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0868042 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATTA AACGCACGAT CCTGATCGCC GCGCTGGCAG TCGTGTCCTA CGTCATGGTC
CTGAAGTGGA ACGATGACTA CGGCCAGGCT GCCCTGCCGA CTCAGAATAC TGCTGCCAGC
ACTGTTGCTC CGGGCTTGCC CGATGGCGTG CCGGCCGGTA ACAACGGTGC CAGCGCCGAT
GTACCGAGCG CCAACGCCGA ATCGAGCCCT GCCGAACTGG CACCGGTCGC ACTCAGCAAG
GACCTGATCC GAGTCAAGAC CGACGTTCTG GAACTGGCTA TCGATCCGGT CGGTGGTGAC
ATCGTCCAGC TGAACCTGCC GAAGTACCCA CGCCGTCAAG ACCACCCGAA CATTCCATTC
CAGTTGTTCG ACAACGGTGG TGAGCGTGTT TACCTGGCAC AAAGTGGTCT GACCGGCACC
GATGGCCCGG ATGCCCGCGC CAGCGGCCGT CCCCTGTATG CCGCCGAGCA GAAGAGCTAC
CAGCTGGCCG ACGGCCAGGA ACAACTGGTG GTAGACCTGA AGTTCAGTGA CAACGGTGTC
AACTACATCA AGCGTTTCAG CTTCAAGCGC GGTGAGTACG ACCTGAATGT CAGCTACCTG
ATCGACAACC AGAGCGGCCA GGCCTGGAGC GGCAACATGT TTGCCCAGCT CAAGCGTGAT
GCCAGCGGCG ATCCGTCCTC CAGTACTGCC ACCGGCACCG CTACCTACCT GGGCGCTGCC
CTGTGGACAG CTTCTGAGCC TTACAAAAAG GTCTCGATGA AGGACATCGA CAAAGGTAGT
TTGAAAGAAA ATGTGTCCGG CGGTTGGGTT GCCTGGCTGC AGCACTACTT CGTGACCGCC
TGGATTCCGG CCAAGTCGGA CAACAACGTT GTCCAGACCC GCAAGGATAG CCAGGGCAAC
TACATCATCG GCTACACCGG CCCGGTTATC AGCGTACCGG CTGGCGGCAA GGTCGAAACC
AGTGCCCTGC TGTACGCCGG CCCGAAGATC CAGTCCAAGC TGAAAGAGTT GTCCCCAGGC
CTGGAATTGA CCGTCGACTA CGGCTTCCTG TGGTTTATCG CTCAGCCGAT CTTCTGGCTG
CTGCAACATA TCCACAGCCT GCTGGGTAAC TGGGGCTGGT CGATCATCGT GCTGACCATG
TTGATCAAAG GCCTGTTCTT CCCACTGTCG GCTGCCAGCT ACCGCTCCAT GGCGCGTATG
CGTGCCGTTG CACCTAAGCT CGCCGCACTC AAGGAACGCT TCGGTGACGA TCGCCAGAAG
ATGTCCCAGG CGATGATGGA GCTTTACAAG AAAGAGAAGA TCAACCCGCT GGGCGGCTGC
CTGCCGATCC TGGTGCAGAT GCCGGTATTC CTGGCCCTGT ACTGGGTACT GCTGGAAAGC
GTGGAAATGC GCCAGGCCCC ATGGATACTG TGGATTACCG ACCTGTCGAT CAAGGATCCG
TTCTTCATCC TGCCGATCAT CATGGGCGCC ACCATGTTCA TCCAGCAGCG CCTGAACCCG
ACACCGCCGG ATCCGATGCA GGCCAAGGTG ATGAAAATGA TGCCAATCAT CTTCACCTTC
TTCTTCCTGT GGTTCCCTGC CGGTCTGGTG CTGTACTGGG TTGTGAACAA CTGCCTGTCC
ATTTCGCAGC AGTGGTACAT CACTCGCCGT ATCGAAGCAG CTACCAAAAA AGCTGCTGCT
TGA
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| Protein sequence | MDIKRTILIA ALAVVSYVMV LKWNDDYGQA ALPTQNTAAS TVAPGLPDGV PAGNNGASAD
VPSANAESSP AELAPVALSK DLIRVKTDVL ELAIDPVGGD IVQLNLPKYP RRQDHPNIPF
QLFDNGGERV YLAQSGLTGT DGPDARASGR PLYAAEQKSY QLADGQEQLV VDLKFSDNGV
NYIKRFSFKR GEYDLNVSYL IDNQSGQAWS GNMFAQLKRD ASGDPSSSTA TGTATYLGAA
LWTASEPYKK VSMKDIDKGS LKENVSGGWV AWLQHYFVTA WIPAKSDNNV VQTRKDSQGN
YIIGYTGPVI SVPAGGKVET SALLYAGPKI QSKLKELSPG LELTVDYGFL WFIAQPIFWL
LQHIHSLLGN WGWSIIVLTM LIKGLFFPLS AASYRSMARM RAVAPKLAAL KERFGDDRQK
MSQAMMELYK KEKINPLGGC LPILVQMPVF LALYWVLLES VEMRQAPWIL WITDLSIKDP
FFILPIIMGA TMFIQQRLNP TPPDPMQAKV MKMMPIIFTF FFLWFPAGLV LYWVVNNCLS
ISQQWYITRR IEAATKKAAA
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