| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5308 |
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| Symbol | trmE |
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| ID | 5193284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5955819 |
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| End bp | 5957189 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640589791 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001270610 |
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| Protein GI | 148550508 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.832252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0803697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACTG TGCGTGAAAC CATCGCCGCC ATCGCCACGG CCCAGGGCCG GGGCGGTGTG
GGAATTGTCA GGTTGTCCGG CCCTCTGGCT GCCAAGGCCG GCCTGTTGAT CACTGGCCGC
ACCCTGACCC CGCGGCATGC CCATTACGGT CCGTTCCGCG ACGATGAAGG GCTGGTGCTG
GACGAAGGGA TTGCTCTGTT CTTTCCAGGG CCTAATTCGT TCACTGGCGA GGACGTGCTT
GAACTGCAGG GACACGGTGG CCCTGTGGTC TTGGACATGC TGCTGCAGCG CTGTGTACAA
GTCGGCTGTC GTCTGGCTCG CCCGGGCGAG TTCAGCGAGC GCGCCTTCCT TAACGACAAG
CTCGACCTGG CGCAGGCCGA AGCCATCGCC GACCTGATCG AGGCCAGTTC CAGCCAGGCA
GCGCGCAACG CCCTGCGCTC GCTGCAAGGG GAATTCTCCA GGCGTGTGCA CAGCCTCACC
GAGGCGTTGA TTGCCCTGCG AATTTACGTC GAGGCGGCGA TCGACTTTCC TGAGGAAGAG
ATCGACTTCC TCGCCGATGG CCACGTGCTG TCGATGCTTG ATGCCGTGCG CAGCGAGTTA
TCCACTGTGC AGCGCGAGGC CGGGCAGGGC GCCTTGCTGC GTGACGGCAT GACGGTAGTC
ATTGCCGGCC GGCCGAATGC TGGTAAGTCG AGCTTGCTGA ACCAGCTGGC CGGGCGGGAA
GCTGCCATCG TCACTGACAT CGCCGGCACC ACGCGGGATA TCCTGCGCGA ACATATCCAC
ATCGACGGCA TGCCGCTGCA CGTTGTCGAT ACTGCCGGCT TGCGCGATAC CGATGACCAT
GTGGAAAAGA TCGGTGTGGA ACGCGCCCTG AAGGCCATTG GCGAGGCAGA CCGTGTGCTG
CTGGTGGTCG ACTCCACTGC GCCCGAGGCC AGCGATCCGT TCGCTTTGTG GCCGGAGTTT
CTCGCTCAGC GGCCGGACCC GGCCAAGGTC ACGTTGATTC GCAACAAGGC CGACCTGAGT
GGTGAGCGGG TAGCGCTGGA ACAGTGCGAT GACGGCCATG TGACCATTAC CCTGAGCGCC
AAGGGCGACG ACACAGGGCT GCAACTGCTC CGCGACCATC TGAAGGGTTG TATGGGTTAC
GAGCAGACTG CAGAGAGTGG CTTCAGCGCC CGCCGGCGCC ATCTGGATGC CTTGCGCCAA
GCCAGCGAGC ACCTGGAGCA CGGCCGTGCT CAATTGACCT TGGCGGGCGC GGGAGAGCTT
CTGGCTGAGG ACTTACGCCA GGCACAGCAT GCGCTGGGGG AGATTACAGG AGCATTCAGC
TCGGATGACC TGCTTGGGCG GATATTCTCC AGCTTCTGCA TCGGCAAGTA A
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| Protein sequence | MNTVRETIAA IATAQGRGGV GIVRLSGPLA AKAGLLITGR TLTPRHAHYG PFRDDEGLVL
DEGIALFFPG PNSFTGEDVL ELQGHGGPVV LDMLLQRCVQ VGCRLARPGE FSERAFLNDK
LDLAQAEAIA DLIEASSSQA ARNALRSLQG EFSRRVHSLT EALIALRIYV EAAIDFPEEE
IDFLADGHVL SMLDAVRSEL STVQREAGQG ALLRDGMTVV IAGRPNAGKS SLLNQLAGRE
AAIVTDIAGT TRDILREHIH IDGMPLHVVD TAGLRDTDDH VEKIGVERAL KAIGEADRVL
LVVDSTAPEA SDPFALWPEF LAQRPDPAKV TLIRNKADLS GERVALEQCD DGHVTITLSA
KGDDTGLQLL RDHLKGCMGY EQTAESGFSA RRRHLDALRQ ASEHLEHGRA QLTLAGAGEL
LAEDLRQAQH ALGEITGAFS SDDLLGRIFS SFCIGK
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