Gene Pput_5274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_5274 
Symbol 
ID5191724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5920960 
End bp5922360 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content62% 
IMG OID640589757 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001270576 
Protein GI148550474 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.409893 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCCT ATGACGTGGT GATCATCGGC GGTGGCCCTG GCGGCTACAA CGCAGCCATC 
CGTGCTGGCC AGTTGGGCCT GAGCGTTGCC TGCGTGGAAG GCCGCTCGAC CTTGGGCGGT
ACCTGCCTGA ACGTCGGCTG CATGCCATCC AAGGCGCTGC TGCATGCTTC GGAGCTTTAC
GAAGCTGCCA GCGGTGACGA GTTCGCCCAC CTCGGTATCG AAGTAAAGCC CACCCTCAAC
CTCGCCCAGA TGATGAAACA GAAGGACGAG AGCGTGACAG GCCTGACCAA GGGCATCGAA
TACCTGTTTC GCAAGAACAA GGTCGAGTGG ATCAAAGGCT GGGGCCGCCT GGATGGCATC
GGCAAGGTCG TGGTCAAGGC CGAAGACGGT AGCGAAACCG CGTTGCAGGC CAAGGACATC
GTCATTGCCA CCGGCTCTGA GCCCACCCCT CTGCCAGGTG TGACCGTCGA CAACCAGCGC
ATCATCGACT CGACCGGCGC GCTGTCGCTG CCGCAAGTGC CCAAGCACCT GGTCGTCATC
GGTGCTGGCG TGATCGGTCT TGAGCTGGGT TCGGTCTGGC GCCGCCTGGG TAGCCAGGTC
ACTGTCATCG AATACCTGGA CCGCATCTGC CCAGGCACTG ACACGGAAAC GGCCAAGACC
CTGCAGAAGG CGCTCGCCAA GCAAGGCATG GTGTTCAAGC TGGGCAGTAA AGTGACTCAG
GCTACCGCAG GTGCCGATGG CGTCAGCCTG ACGCTGGAGC CTGCCGCCGG TGGTACCGCA
GAATCGCTGC AAGCCGATTA CGTGTTGGTG GCTATCGGCC GCCGCCCTTA TACAAAAGGG
CTGAACCTGG AAAGCGTGGG CCTGGAAGCC GACAAGCGCG GCATGCTCAG CAACGAGCAC
CACCGTACCT CAGTGCCGGG TGTCTGGGTG ATTGGCGACG TCACTTCGGG CCCAATGCTG
GCGCACAAGG CCGAAGACGA AGCGGTGGCC TGTATCGAAC GCATCGCCGG CAAGCCCCAC
GAGGTCAACT ACAACCTCAT CCCTGGCGTG ATCTATACCC GCCCGGAGAT GGCCACCGTG
GGCAAGACTG AAGAGCAGCT CAAGGCCGAA GGGCGTGCCT ACAAGGTTGG CAAGTTCCCC
TTCACCGCCA ACAGCCGTGC CAAGATCAAC CACGAGACCG AAGGCTTCGC CAAGGTCATC
GCCGATGCCG AAACCGATGA AGTACTGGGT GTGCACCTGG TGGGCCCAAG CGTCAGCGAG
ATGATTGGTG AGTTCTGCGT GGCTATGGAG TTCTCGGCCT CGGCAGAAGA TATCGCCCTC
ACCTGCCACC CTCACCCGAC GCGCTCCGAG GCCCTGCGCC AGGCGGCGAT GAATGTGGAT
GGCATGGCCA TGCAAATCTG A
 
Protein sequence
MKSYDVVIIG GGPGGYNAAI RAGQLGLSVA CVEGRSTLGG TCLNVGCMPS KALLHASELY 
EAASGDEFAH LGIEVKPTLN LAQMMKQKDE SVTGLTKGIE YLFRKNKVEW IKGWGRLDGI
GKVVVKAEDG SETALQAKDI VIATGSEPTP LPGVTVDNQR IIDSTGALSL PQVPKHLVVI
GAGVIGLELG SVWRRLGSQV TVIEYLDRIC PGTDTETAKT LQKALAKQGM VFKLGSKVTQ
ATAGADGVSL TLEPAAGGTA ESLQADYVLV AIGRRPYTKG LNLESVGLEA DKRGMLSNEH
HRTSVPGVWV IGDVTSGPML AHKAEDEAVA CIERIAGKPH EVNYNLIPGV IYTRPEMATV
GKTEEQLKAE GRAYKVGKFP FTANSRAKIN HETEGFAKVI ADAETDEVLG VHLVGPSVSE
MIGEFCVAME FSASAEDIAL TCHPHPTRSE ALRQAAMNVD GMAMQI