| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5250 |
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| Symbol | |
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| ID | 5192402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5893894 |
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| End bp | 5894997 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640589733 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001270552 |
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| Protein GI | 148550450 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.258715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.223188 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCGAC TCAAACGTCT GCTCGCCCCG TTCATCGCTG CCACCCTGTT CGCGGGCGCC
CTGCATGCGC AAGCCGAGCA GCGAACCCTG CGTGTATATA ACTGGTTCGA TTACATCACC
CCGCAGACCT TGACTGCCTT CCAGAAGGAC AGCGGCGTGA AGCTGGTGTA CGACATCTTC
GACACCAATG AGGCATTGGA AGCCAAGCTG CTAACCGGCA ACTCCGGCTA TGACGTGGTA
GTACCGTCCA ACGTGTTCCT CGCCAAGCAG ATCGAAGCCG GGGTGTTCCA GCCGCTGGAT
CGCAGCAAGC TGCCGAACTG GCAACACCTG GACCCGGCAC TGATGAAGCT GATCGAAGCT
AACGACCCGG GCAACAAGTT TGCCGTGCCG TATATGTACG GCACCGTGCT GATCGGCTTC
AACCCGGCCA AGGTCAAGGC TGCGCTCGGC GACAACGCAC CGGTGGACAG CTGGGACCTG
ATCTTCAAGG AAGAGAACAT CGCCAAGCTC AAGCAGTGCG GCGTGGCCCT GCTCGACTCG
CCGTCGGAGA TTCTACCGCT GGCCCTGCAG TACCTGGGCT TGCCGCCGAA CAGCGACAAA
CCGGCTGACT ACAAGAAGGC CGAGGAGCTG ATGCTGAAGA TTCGTCCGCA TATCACCTAC
TTCCACTCCT CGAAGTACAT GGCAGACATC GCCAATGGCG ACATCTGTGT GGCAGTGGGC
TACAGCGGCA GCTTCTCGCA GGCAGCCAAC CGCGCCCGTG AGGCGAACAA CGGCGTGGTG
GTGGACATGC GCCTGCCCAA GGAAGGCGCG CCGATCTGGT TCGACATGCT GGCGATTCCA
AAGGGTGCAG CGAACCCGGA GGATGCGCAT ACGTTCATCA ATTACCTGCT GCGGCCAGAG
GTGATTGCGC CGATCAGCGA CTTCGTGGGG TATCCGAACC CGAACAAGGA TGCGACCGAC
AAGGTGAATC CGACGATTCG CAACAACCCC AACCTGTATC CGACGGCAGA GGCGATGGCC
AAGCTGTATA CCCTCAAGCC TTTGACGCGA AATGCCGAAC GGGCCAGAAC CCGCGCCTGG
ACGCGGATAA AGTCCGGTAC CTGA
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| Protein sequence | MVRLKRLLAP FIAATLFAGA LHAQAEQRTL RVYNWFDYIT PQTLTAFQKD SGVKLVYDIF
DTNEALEAKL LTGNSGYDVV VPSNVFLAKQ IEAGVFQPLD RSKLPNWQHL DPALMKLIEA
NDPGNKFAVP YMYGTVLIGF NPAKVKAALG DNAPVDSWDL IFKEENIAKL KQCGVALLDS
PSEILPLALQ YLGLPPNSDK PADYKKAEEL MLKIRPHITY FHSSKYMADI ANGDICVAVG
YSGSFSQAAN RAREANNGVV VDMRLPKEGA PIWFDMLAIP KGAANPEDAH TFINYLLRPE
VIAPISDFVG YPNPNKDATD KVNPTIRNNP NLYPTAEAMA KLYTLKPLTR NAERARTRAW
TRIKSGT
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