Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_5248 |
Symbol | |
ID | 5193167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5891562 |
End bp | 5892554 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640589731 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001270550 |
Protein GI | 148550448 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.23442 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.222302 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCACA GCCACCTGAC CACCCTCAAC GCAGTTTCGC TGATCCTCAA CGTCTTCCAG GCAGACGGTT GCGAGGCGTC GGCGTTGCTG GCCGGCAGCG GCATTGGCCC GGCAGACCTG GGGCATGCCG ATGCGCGCAT CACCACCCAG CAGGAGCTGC AGGTTTGCGC CAATGCTGTG GCCCGGCGCG AGGACATTGG CCTGGAACTG GGCCAGCGCA TGCGTGTGTC GTGCTACGGC ATGCTCGGTT ACGCGCTGCT CTCCAGTGCC ACTTTGGGTG ACGCCTTACG CCTGGCGCTG CAGTATCCGG CACTGCTGGG AACAGTCTTC AAGCTGCGCT TGCTCGACGA CGGCCAACGT GTCTGGTTCA GCGCCAGCGA TTACCAGGAC AGCCCGGCGC TGAGCGCTTT CAACGCCGAG TTCTGTCTGG TGTCACTGAA AGTCATCTGT GACGACCTGC TTGGCCGGCC ATTGCCGCTG CTTGGCGCAC GCTTCGAACA CCCTCGCCCT GGTTACCACG CGCTCTATGC CGAAGCGTTT CAATGCCCGA TCGGTTTCGC CGCCGAGGAC AATGCCTTTG CCTTCGAACG GCGATGGCTG GATATGCCGC TGCCGCTGGC CGACCCGATT ACTCACAAAG CCATGAGCGA GCGCTGCCGG CGCCTGAACC TTGAATTCAC CGGTCGCCAG GCATGGCTGG GGCGGATTCG CCAGCTGTTG GCGCAGCAAC TGGACGCAGC ACCTGGGCTG GAAGGGCTTG CGCGGCAGAT GAACTGCTCG TCGCGCACCC TGCGCCGGCA TTTGCAGGCG CTGGGCAGCA GTTATCAACA GCTGCTGGAT GAGCTGAGGT TCGAGCGGGC CAAGCAGTTG CTGGCCGATG AGCAGATGCC GATCTACCGG ATTGCGGAGA CTTTGGGGTT CAGTGAGACG GCCAGTTTTC GGCATGCCTT CCAGCGCTGG AGTGGCGTGG CGCCCAGCCA TTTTCGTGGT TGA
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Protein sequence | MLHSHLTTLN AVSLILNVFQ ADGCEASALL AGSGIGPADL GHADARITTQ QELQVCANAV ARREDIGLEL GQRMRVSCYG MLGYALLSSA TLGDALRLAL QYPALLGTVF KLRLLDDGQR VWFSASDYQD SPALSAFNAE FCLVSLKVIC DDLLGRPLPL LGARFEHPRP GYHALYAEAF QCPIGFAAED NAFAFERRWL DMPLPLADPI THKAMSERCR RLNLEFTGRQ AWLGRIRQLL AQQLDAAPGL EGLARQMNCS SRTLRRHLQA LGSSYQQLLD ELRFERAKQL LADEQMPIYR IAETLGFSET ASFRHAFQRW SGVAPSHFRG
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