| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5137 |
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| Symbol | dapF |
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| ID | 5193716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5771423 |
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| End bp | 5772253 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589620 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001270439 |
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| Protein GI | 148550337 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.91439 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCTGC GTTTTACCAA GATGCATGGG CTGGGCAACG ACTTCATGGT CCTGGACCTG
GTCAGCCAGC ACGCGCACAT TCAGCCCAAG CACGCCAAGC AATGGGGTGA CCGTCACACC
GGCATCGGCT TTGACCAGTT GCTGATCGTC GAGGCGCCGA ACAACCCGGA AGTGGACTTC
CGCTACCGCA TCTTCAACGC CGACGGCTCC GAGGTCGAGC AATGCGGCAA CGGTGCGCGC
TGCTTTGCCC GCTTTGTGCT GGACAAGCGC CTGACCGCCA AAAAGCGCAT CCGCGTGGAA
ACCAAGAGCG GCATCATCGT GCTGGACGTG CAGAACGACG GCCAGGTGAG TGTCAACATG
GGCCCGCCGC GCTTCATCCC TGCCGAAATT CCCTTTGTCG CCGACGCACA GGCGCCAAGC
TACCCGCTGG TAGTTGACGG CCAGTTGTAC TCGATAGCCG CCGTGTCCAT GGGTAACCCG
CACGCCGTGC TGCGTGTCGA CGACGTGTCT ACTGCGCCTG TGCATGAGCT GGGCCCGAAG
ATCGAAAACC ACCCACGCTT CCCACAGCGG GTGAATGCCG GCTTCATTCA AGTCATCGAC
CGCCACCGCG CCAACCTGCG CGTGTGGGAA CGCGGCGCCG GCGAAACCCA GGCTTGCGGC
ACCGGCGCCT GCGCCGCAGC CGTGGCGGCG ATCAGCCAGG GCTGGATGGA TTCCCCGGTG
TCCCTCGACC TGCCCGGTGG TCGCCTGCAC ATCGAATGGG CCGGCCCCGG CAAGCCCGTG
ATGATGACCG GCCCGGCCGT ACGCGTCTAC GAAGGACAGG TTCGTCTCTA A
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| Protein sequence | MLLRFTKMHG LGNDFMVLDL VSQHAHIQPK HAKQWGDRHT GIGFDQLLIV EAPNNPEVDF
RYRIFNADGS EVEQCGNGAR CFARFVLDKR LTAKKRIRVE TKSGIIVLDV QNDGQVSVNM
GPPRFIPAEI PFVADAQAPS YPLVVDGQLY SIAAVSMGNP HAVLRVDDVS TAPVHELGPK
IENHPRFPQR VNAGFIQVID RHRANLRVWE RGAGETQACG TGACAAAVAA ISQGWMDSPV
SLDLPGGRLH IEWAGPGKPV MMTGPAVRVY EGQVRL
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