| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5136 |
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| Symbol | |
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| ID | 5193715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5770171 |
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| End bp | 5771418 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589619 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001270438 |
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| Protein GI | 148550336 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.206313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCTT TCAACTACCG CGACGGTGAG CTGTTCGCGG AAGGCGTGGC CCTGTCGGCC
ATTGCTGAAC GTTACGGCAC CCCCACCTAT GTGTACTCGC GCGCCCACAT CGAGGCCCAG
TACCGTAGCT ACGCAGACGC CCTGCAAGGT ACCGAGCACC TGGTGTGCTT CGCGGTCAAG
GCCAACTCCA ACCTTGGCGT GCTGAACGTG CTGGCGCGCC TGGGCGCAGG CTTTGACATT
GTCTCCGGTG GTGAACTGGA GCGTGTACTG GCCGCTGGCG GGCGTGCCGA CCGCGTGGTG
TTCTCCGGTG TTGGCAAAAC CCGTGAAGAC ATGCGCCGTG CCCTGGAAGT TGGCGTGCAC
TGCTTCAACG TCGAATCCAC CGACGAGCTG GAGCGCCTGC AAGTGGTCGC CGCCGAAATG
GGCAAGGTTG CCCCGGTGTC GCTGCGGGTC AACCCGGACG TCGATGCCGG TACTCACCCG
TACATCTCCA CCGGCCTTAA AGAAAACAAG TTCGGCATCG CCATTGCCGA TGCCGAGGCC
ATCTACGTAC GCGCCGCACA GCTACCGAAC CTGGAAGTGG TCGGTGTCGA CTGCCACATC
GGCTCGCAAC TGACCACCGT CGAGCCATTC CTCGACGCCC TCGACCGCCT GCTGGTGCTG
GTCGACCGCC TGGCCGAGTG CGGCATACAC CTGCGCCACC TGGACCTGGG TGGCGGTGTC
GGCGTGCGCT ACCGCGACGA ACAGCCACCA CGGGTGGCCG ACTACATCAA GGCCATCCGC
GAACGCGTGG GCGAGCGCGA CCTGGCCCTG GTGTTCGAGC CTGGCCGCTA CATCGTCGCC
AACGCTGGCG TGCTGCTGAC CCGCGTGGAA TACCTCAAGC ACACCGAACA CAAGGACTTC
GCGATCATCG ATGCAGCGAT GAACGACCTG ATCCGCCCGG CCCTGTACCA GGCCTGGATG
GGTGTCAGCG CGGTCAAGCC ACGTGCAGGC GAAGGCCGTG CCTATGACCT GGTCGGCCCT
ATCTGCGAGA CTGGCGACTT CCTCGGCAAG GACCGCGTAC TCAACCTGAC CGAAGGTGAC
CTGCTGGCCG TAGAGTCCGC GGGCGCCTAT GGTTTTGTCA TGAGCTCCAA CTACAACACC
CGCGGCCGTT GCGCTGAAAT CCTGGTCGAC GGCGACCAGG CGTTCGAAGT ACGCCGCCGC
GAGACCGTCG CCGAACTGTA TGCTGGCGAA AGCCTGCTGC CGGAGTAA
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| Protein sequence | MNAFNYRDGE LFAEGVALSA IAERYGTPTY VYSRAHIEAQ YRSYADALQG TEHLVCFAVK
ANSNLGVLNV LARLGAGFDI VSGGELERVL AAGGRADRVV FSGVGKTRED MRRALEVGVH
CFNVESTDEL ERLQVVAAEM GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAIADAEA
IYVRAAQLPN LEVVGVDCHI GSQLTTVEPF LDALDRLLVL VDRLAECGIH LRHLDLGGGV
GVRYRDEQPP RVADYIKAIR ERVGERDLAL VFEPGRYIVA NAGVLLTRVE YLKHTEHKDF
AIIDAAMNDL IRPALYQAWM GVSAVKPRAG EGRAYDLVGP ICETGDFLGK DRVLNLTEGD
LLAVESAGAY GFVMSSNYNT RGRCAEILVD GDQAFEVRRR ETVAELYAGE SLLPE
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