Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_5057 |
Symbol | |
ID | 5193485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5684850 |
End bp | 5685524 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640589540 |
Product | ribose-5-phosphate isomerase A |
Protein accession | YP_001270359 |
Protein GI | 148550257 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0120] Ribose 5-phosphate isomerase |
TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0837003 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCCAGG ACCAACTCAA ACAGGCCGTC GCCCAGGCCG CTGTCGACTT CATTCTGCCC AAGCTGGATG AAAAGAGCGT CGTAGGCGTC GGTACCGGTT CGACCGCCAA CTTCTTCATC GATGCCCTGG CTCAGCACAA GACCGCGTTC GACGGCGCAG TCGCCAGCTC CGAAGCCACT GCCCAGCGCC TGAAGGGCCA TGGCATCCCG GTCTACGAAC TGAACAGCGT CAGCGAGCTT GAGTTTTACG TGGACGGTGC TGACGAGAGC GACGCACACC TGCACCTTAT CAAGGGCGGC GGCGCAGCCC TGACCCGCGA AAAGATCGTC GCGGCCGTGG CCAAGACCTT CATCTGCATC GCCGACGGCA GCAAGCTGGT GCCGGTACTG GGGGCCTTCC CGCTGCCGGT CGAAGTAATC CCCATGGCCC GCAGCCACGT GGCACGTCAG CTGGTGAAGC TGGGTGGTGA CCCGGTGTAC CGTGAAGGCG TGGTCACCGA CAACGGCAAC GTGATCCTGG ATGTGTACAA CCTGCAGATC ACCAACCCGG TGGAGCTGGA AGCACAGATC AACGCCATCG TCGGCGTGGT GACCAACGGC CTGTTCGCGG CGCGGCCGGC GGATCTGCTG CTGCTGGGTA CCGCTGAAGG CGTGAAGAGC CTGAAGGCCG AGTAA
|
Protein sequence | MTQDQLKQAV AQAAVDFILP KLDEKSVVGV GTGSTANFFI DALAQHKTAF DGAVASSEAT AQRLKGHGIP VYELNSVSEL EFYVDGADES DAHLHLIKGG GAALTREKIV AAVAKTFICI ADGSKLVPVL GAFPLPVEVI PMARSHVARQ LVKLGGDPVY REGVVTDNGN VILDVYNLQI TNPVELEAQI NAIVGVVTNG LFAARPADLL LLGTAEGVKS LKAE
|
| |