Gene Pput_5004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_5004 
Symbol 
ID5191761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5624561 
End bp5625952 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content64% 
IMG OID640589489 
Productsodium:dicarboxylate symporter 
Protein accessionYP_001270308 
Protein GI148550206 
COG category[R] General function prediction only 
COG ID[COG1823] Predicted Na+/dicarboxylate symporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.143079 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCTGC CGCTGTCACT CAACCTGCTG GCGTTCCTGG CCCTGTTGCT GGGCCTGGCA 
CAAACCCGCC GCACCGACTG GAGCCTGGCC AAGAAGGTAC TGCTTGGCCT GGTGCTGGGC
GTGGTCTTCG GCCTTGTGCT GCACACGATC TATGGCGCTG GCCACCCCGT GCTCAAGGCA
ACCATCGCCT GGCTCGATCT GGTCGGCAAC GGCTATGTCG GCCTGCTGCA GATGATCGTC
ATGCCGCTGA TCTTCGCCTC GATCCTCAGT GCCGTGGCAC GTTTGCACAC TGCCTCTTCG
CTGGGCCGCA TCAGCGTGCT GAGCATCGGC ACCCTGCTGC TGACCACGGC CATTGCCGCC
CTGATCGGCA TTGTGTTGAC CAACCTGTTC GGCCTCAGCG CCGAGGGCCT GGTGGCCGGC
GCCCAGGAAA GCGCACGCAT GCAGGTTATC CACAGTGACT ACGCGGGCAA GGTTGCCGAC
CTCAACATCC CGCAACTGCT GCTGTCGTTC ATCCCCAGCA ACCCGGTAGG CGACCTGGCG
CGGGCCAAGC CGACCTCGAT CATCAGCGTG GTGATTTTTG CCGTGTTCCT CGGCCTGGCC
GCGCTCCAGT TGATCAAGGA CGACGCCGAG AAGGGCGAGC GCGCCCTGTC GGCCATCGAC
ACCCTGCAGG CCTGGGTAAT GCGCCTGGTG CGGGTCGTGA TGAAGCTGAC CCCCTATGGC
GTGCTGGCGT TGATGACCAA AGTAGTGGCC AGTTCCAACA CGGAGGACAT CCTCAAGCTG
GGCAGCTTCG TGGTGGTGTC GTACCTGGGC CTGGGGTTGA TGTTCGTGGT GCACGGCATC
ATCCTCGCCG CCACCGGCGT GAGCCCGCTG CGCTTCTTCC GCAAGGTGTG GCCGGTGCTG
ACCTTCGCCT TCACCAGCCG CTCCAGCGCC GCCAGCATTC CGCTGAACAT CGAAGCACAA
ACCCGCCGTC TGGGCGTGCC GCAATCGATC GCCAGCTTCA GCGCATCGTT CGGCACCACC
ATTGGCCAGA ACGGCTGTGC CGGGCTCTAT CCTGCCATGC TGGCGGTGAT GGTCGCGCCA
GCGGTGGGCA TCGACACCTT CGACCCACTG TGGATCGCCA CCCTGGTGGC CATCGTCACG
CTGAGTTCGG CAGGGGTTGC CGGCGTGGGC GGCGGTGCCA CCTTTGCCGC GCTGATCGTG
CTGCCAGCCA TGGGCTTGCC GGTGGAACTG GTGGCGTTGC TGATTTCGGT GGAGCCGCTG
ATCGACATGG GCCGTACGGC GTTGAACGTG AACGGATCGA TGACGGCGGG CGTTGTCACC
AGCCAGCTGT TGAAAGAGAC TGACAAGGAA GTGCTGGCCG GTGATGAACA TGCCGAGCTG
AGCCACACCT GA
 
Protein sequence
MNLPLSLNLL AFLALLLGLA QTRRTDWSLA KKVLLGLVLG VVFGLVLHTI YGAGHPVLKA 
TIAWLDLVGN GYVGLLQMIV MPLIFASILS AVARLHTASS LGRISVLSIG TLLLTTAIAA
LIGIVLTNLF GLSAEGLVAG AQESARMQVI HSDYAGKVAD LNIPQLLLSF IPSNPVGDLA
RAKPTSIISV VIFAVFLGLA ALQLIKDDAE KGERALSAID TLQAWVMRLV RVVMKLTPYG
VLALMTKVVA SSNTEDILKL GSFVVVSYLG LGLMFVVHGI ILAATGVSPL RFFRKVWPVL
TFAFTSRSSA ASIPLNIEAQ TRRLGVPQSI ASFSASFGTT IGQNGCAGLY PAMLAVMVAP
AVGIDTFDPL WIATLVAIVT LSSAGVAGVG GGATFAALIV LPAMGLPVEL VALLISVEPL
IDMGRTALNV NGSMTAGVVT SQLLKETDKE VLAGDEHAEL SHT