Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_5004 |
Symbol | |
ID | 5191761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5624561 |
End bp | 5625952 |
Gene Length | 1392 bp |
Protein Length | 463 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589489 |
Product | sodium:dicarboxylate symporter |
Protein accession | YP_001270308 |
Protein GI | 148550206 |
COG category | [R] General function prediction only |
COG ID | [COG1823] Predicted Na+/dicarboxylate symporter |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.143079 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCTGC CGCTGTCACT CAACCTGCTG GCGTTCCTGG CCCTGTTGCT GGGCCTGGCA CAAACCCGCC GCACCGACTG GAGCCTGGCC AAGAAGGTAC TGCTTGGCCT GGTGCTGGGC GTGGTCTTCG GCCTTGTGCT GCACACGATC TATGGCGCTG GCCACCCCGT GCTCAAGGCA ACCATCGCCT GGCTCGATCT GGTCGGCAAC GGCTATGTCG GCCTGCTGCA GATGATCGTC ATGCCGCTGA TCTTCGCCTC GATCCTCAGT GCCGTGGCAC GTTTGCACAC TGCCTCTTCG CTGGGCCGCA TCAGCGTGCT GAGCATCGGC ACCCTGCTGC TGACCACGGC CATTGCCGCC CTGATCGGCA TTGTGTTGAC CAACCTGTTC GGCCTCAGCG CCGAGGGCCT GGTGGCCGGC GCCCAGGAAA GCGCACGCAT GCAGGTTATC CACAGTGACT ACGCGGGCAA GGTTGCCGAC CTCAACATCC CGCAACTGCT GCTGTCGTTC ATCCCCAGCA ACCCGGTAGG CGACCTGGCG CGGGCCAAGC CGACCTCGAT CATCAGCGTG GTGATTTTTG CCGTGTTCCT CGGCCTGGCC GCGCTCCAGT TGATCAAGGA CGACGCCGAG AAGGGCGAGC GCGCCCTGTC GGCCATCGAC ACCCTGCAGG CCTGGGTAAT GCGCCTGGTG CGGGTCGTGA TGAAGCTGAC CCCCTATGGC GTGCTGGCGT TGATGACCAA AGTAGTGGCC AGTTCCAACA CGGAGGACAT CCTCAAGCTG GGCAGCTTCG TGGTGGTGTC GTACCTGGGC CTGGGGTTGA TGTTCGTGGT GCACGGCATC ATCCTCGCCG CCACCGGCGT GAGCCCGCTG CGCTTCTTCC GCAAGGTGTG GCCGGTGCTG ACCTTCGCCT TCACCAGCCG CTCCAGCGCC GCCAGCATTC CGCTGAACAT CGAAGCACAA ACCCGCCGTC TGGGCGTGCC GCAATCGATC GCCAGCTTCA GCGCATCGTT CGGCACCACC ATTGGCCAGA ACGGCTGTGC CGGGCTCTAT CCTGCCATGC TGGCGGTGAT GGTCGCGCCA GCGGTGGGCA TCGACACCTT CGACCCACTG TGGATCGCCA CCCTGGTGGC CATCGTCACG CTGAGTTCGG CAGGGGTTGC CGGCGTGGGC GGCGGTGCCA CCTTTGCCGC GCTGATCGTG CTGCCAGCCA TGGGCTTGCC GGTGGAACTG GTGGCGTTGC TGATTTCGGT GGAGCCGCTG ATCGACATGG GCCGTACGGC GTTGAACGTG AACGGATCGA TGACGGCGGG CGTTGTCACC AGCCAGCTGT TGAAAGAGAC TGACAAGGAA GTGCTGGCCG GTGATGAACA TGCCGAGCTG AGCCACACCT GA
|
Protein sequence | MNLPLSLNLL AFLALLLGLA QTRRTDWSLA KKVLLGLVLG VVFGLVLHTI YGAGHPVLKA TIAWLDLVGN GYVGLLQMIV MPLIFASILS AVARLHTASS LGRISVLSIG TLLLTTAIAA LIGIVLTNLF GLSAEGLVAG AQESARMQVI HSDYAGKVAD LNIPQLLLSF IPSNPVGDLA RAKPTSIISV VIFAVFLGLA ALQLIKDDAE KGERALSAID TLQAWVMRLV RVVMKLTPYG VLALMTKVVA SSNTEDILKL GSFVVVSYLG LGLMFVVHGI ILAATGVSPL RFFRKVWPVL TFAFTSRSSA ASIPLNIEAQ TRRLGVPQSI ASFSASFGTT IGQNGCAGLY PAMLAVMVAP AVGIDTFDPL WIATLVAIVT LSSAGVAGVG GGATFAALIV LPAMGLPVEL VALLISVEPL IDMGRTALNV NGSMTAGVVT SQLLKETDKE VLAGDEHAEL SHT
|
| |