| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4918 |
|---|
| Symbol | |
|---|
| ID | 5193466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5519570 |
|---|
| End bp | 5521390 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640589403 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_001270222 |
|---|
| Protein GI | 148550120 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCGAAA ATCTGCGTAA CATCGCCATC ATCGCCCACG TTGACCATGG TAAAACCACT
CTGGTCGACA AACTCCTGCG TCAGTCCGGC ACTCTGGAGC GTAACGAGCT CAATGACGAG
CGCGTCATGG ACTCCAACGA CCAGGAAAAA GAGCGCGGTA TTACCATTCT GGCGAAAAAC
ACCGCCATCA ACTGGAACGG CTACCACATC AACATCGTCG ACACCCCCGG CCACGCCGAC
TTCGGTGGCG AGGTTGAGCG TGTAATGTCG ATGGTCGACT CCGTGCTGCT GCTGGTCGAC
GCCCAAGACG GCCCGATGCC GCAAACCCGC TTCGTGACCA AGAAGGCTTT CGAAGCCGGC
CTGAAGCCAA TCGTCGTGAT CAACAAGGTT GACCGTCCGG GCGCACGTCC TGACTGGGTT
CTGGACCAGA TCTTCGACCT GTTCGACAAC CTCGGTGCCA CCGACGAACA GCTGGACTTC
AAAGTGGTCT ACGCCTCGGC CCTGAACGGC ATTGCCGGCC TGGACCACAC TGCCATGGCC
GAAGACATGA CCCCGCTGTA CCAGTCGATC ATCGACAACG TACCAGCACC GTCTGTTGAC
CGCGACGGCC CGTTCCAGAT GCAGATCTCC GCACTGGACT ACAACAGCTT CCTCGGCGTG
ATCGGTGTTG GCCGCATCGC CCGTGGCCGC GTCAAGCCGA ACACCCCGGT TGTCGCCATC
GACACCAACG GCAAGAAGCG TAACGGCCGT ATCCTGAAGC TGATGGGTCA CCACGGTCTG
CACCGCGTTG ACGTCGAAGA AGCCCAGGCT GGCGATATCG TCTGCATCAG CGGTTTCGAT
GAGCTGTTCA TCTCCGACAC CCTGTGCGCC CCGGATGCGG TAGAAGCGAT GAAGCCGCTG
ACCGTTGACG AGCCGACCGT TTCGATGACC TTCCAGGTCA ACGACTCGCC GTTCTGCGGT
AAAGAAGGCA AGTTCGTCAC CAGCCGTAAC ATCAAGGACC GTCTGGACAA GGAGCTGCTG
TACAACGTTG CTCTGCGCGT TCAGGAGACC GACTCCCCTG ACAAGTTCAA GGTTTCGGGC
CGTGGTGAGC TGCACCTGTC GGTGCTGATC GAAACCATGC GTCGTGAAGG CTTCGAAATG
GCCGTGGGCC GTCCTGAAGT GATCATCCGC GAAGTCGACG GCGTGAAGCA GGAGCCGTTC
GAGAACGTCA CCATCGACAT CCCTGAAGAA TCCCAGGGCA AGGTCATGGA AGAGATGGGT
CTGCGTAAAG GCGACCTGAC CAACATGGTT CCGGATGGCA AGGGCCGCGT TCGTCTGGAG
TACAACATTC CAGCCCGTGG TCTGATCGGT TTCCGTAACC AGTTCCTGAC TCTGACCAAC
GGTGCAGGCA TCCTGACCTC GATCTTCGAT CGCTACGACA CCATGAAGTC GGGCCAGATG
TCCGGCCGCC TCAACGGCGT ACTGGTTTCG GTCGAGACCG GCAAGGCACT GACCTACTCG
CTGGAAACCC TGCAGGCTCG CGGCAAGCTG TTCGTTGAAC ACGGCCAGGA GATCTACAAC
GGTCAGATCA TCGGTCTGAA CAGCCGTGAC AACGACCTGG GCGTGAACCC GACCAAAGGC
AAGAAGCTCG ACAACATGCG TGCTTCGGGC AAAGACGAAG TCATCGCCCT GGTACCACCA
GTTCGCCACA CCCTCGAGCA GGCCCTGGAA TTCATCCAGG ACGACGAGCT GTGCGAAGTG
ACGCCTAAGT CGATCCGTCT GCGCAAGAAG ATCCTGGACG AAGGCGAGCG TACCCGCGCA
GCCAAGAAAG CCAAGAACTG A
|
|---|
| Protein sequence | MIENLRNIAI IAHVDHGKTT LVDKLLRQSG TLERNELNDE RVMDSNDQEK ERGITILAKN
TAINWNGYHI NIVDTPGHAD FGGEVERVMS MVDSVLLLVD AQDGPMPQTR FVTKKAFEAG
LKPIVVINKV DRPGARPDWV LDQIFDLFDN LGATDEQLDF KVVYASALNG IAGLDHTAMA
EDMTPLYQSI IDNVPAPSVD RDGPFQMQIS ALDYNSFLGV IGVGRIARGR VKPNTPVVAI
DTNGKKRNGR ILKLMGHHGL HRVDVEEAQA GDIVCISGFD ELFISDTLCA PDAVEAMKPL
TVDEPTVSMT FQVNDSPFCG KEGKFVTSRN IKDRLDKELL YNVALRVQET DSPDKFKVSG
RGELHLSVLI ETMRREGFEM AVGRPEVIIR EVDGVKQEPF ENVTIDIPEE SQGKVMEEMG
LRKGDLTNMV PDGKGRVRLE YNIPARGLIG FRNQFLTLTN GAGILTSIFD RYDTMKSGQM
SGRLNGVLVS VETGKALTYS LETLQARGKL FVEHGQEIYN GQIIGLNSRD NDLGVNPTKG
KKLDNMRASG KDEVIALVPP VRHTLEQALE FIQDDELCEV TPKSIRLRKK ILDEGERTRA
AKKAKN
|
|---|
| |