Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4852 |
Symbol | |
ID | 5190647 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5441925 |
End bp | 5442713 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640589337 |
Product | extracellular solute-binding protein |
Protein accession | YP_001270156 |
Protein GI | 148550054 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.157097 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0489444 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCACATA TCGCCCGTCT GTTCTGGATC CTCCTGCTCG TTTGCCTGAG CCCGTTGGCT CTGGGCGAAC GCTTGCGCCT GGTAACCGAC GACTGGGCAC CTTATGTGTT TCAGCACAAC GGCCAACCGC GCGGCATCGA CTACGAAGTC GCCAGCCAGG TCTTCGCACG CCTCGGCGTC GAGGTGGAGT GGCAATTCCT GCCTTGGAAG CGCTGCTTGG CGATGGCTGA GCAGGGCCTG GCCGATGGCA TTCTCGACAT CTTCCAGACG GACGCGCGCC AACCCTACAT GGTGTATGGC TCCGAACCTA TGTCGGAGGT CGAATTCGTC CTGTTCCAAA GCCGCTCGCG CCGCCATGCC GTCACCCACC TGGACGACCT CGCCGGCCTC ACCGTCGGCA CCTCGCCCGG CTACGCCTAC GGTAAAGCGT TCACCGAGGC CCCGCACTTC AAGCGCGAAG CCGCACCCAC CCACGAAGCC AACTTCGGCA AGCTGGTGCT GGGCCGTATC GACCTGGCGA TCACCGACCG CAGGGTCGGG CATTACCTGC TCCGCCAGCT CGGCCTGCAA CAGCAAGTCG AAGAACTGCC GCTGGTAGTC AGCCGCCAGG CGCAGTATTT GGGCCTGGTG CGCAAGCCTG GGCGCGAGGC ACTGGCCGTG GCCTTTGCCG AAGAGCTGCA GCGGTTCAAG CAGGAACCGG CCTATGCAGC GATCAGCAAC CGCTATACAA GCGACACTGG AAACATTCTC AACGCCGTTG AGCAGCAGGA AAGCAGCACA GCGCGATAG
|
Protein sequence | MPHIARLFWI LLLVCLSPLA LGERLRLVTD DWAPYVFQHN GQPRGIDYEV ASQVFARLGV EVEWQFLPWK RCLAMAEQGL ADGILDIFQT DARQPYMVYG SEPMSEVEFV LFQSRSRRHA VTHLDDLAGL TVGTSPGYAY GKAFTEAPHF KREAAPTHEA NFGKLVLGRI DLAITDRRVG HYLLRQLGLQ QQVEELPLVV SRQAQYLGLV RKPGREALAV AFAEELQRFK QEPAYAAISN RYTSDTGNIL NAVEQQESST AR
|
| |