Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4841 |
Symbol | ligB |
ID | 5191826 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5430394 |
End bp | 5432094 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640589326 |
Product | NAD-dependent DNA ligase LigB |
Protein accession | YP_001270145 |
Protein GI | 148550043 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.596764 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGTACC TGTTGTTGTT CGCCCTGCTA TTTGCACTGA ACGCCCCATT GGCCAGGGCT GCCTCATGCC CACAGTGGAG CCCGCAACAG GCCAAGGCCG AAGTTGCGCA ACTCCGCGCC ACGCTTGCCC GATGGGACGA GCACTACCAT CGCCAGGGCA TAGCCCTGGT GGCCGACGAA CTGTACGACC AGAGCCGCGA GCGCCTGAAC CACCTGCAGC AGTGCTTCGC GGTTGGCACC AGCCCCTCCC CTCTGGCCAG CGCTCGCGGC CCGGTCCCCC ACCCCGTGCC GCATACCGGC GTCGACAAGC TGGCAGACCG CCAGGCCGTG GCGCGATGGA TGGCCGGCAA GAGCGGCGTG TGGGTACAGC CCAAGGTCGA CGGCGTAGCC GTTTCCCTCA CCTACCAACA GGGCCGATTG GTGCAGCTGA CCAGCCGGGG GGACGGCGTA AACGGCCATG ACTGGAGCCG ACACATCCCG CAACTCGACG CTGTCACTCG GCAGTTGCCT GAGGCGCTCG ACCTGCACTT GCAAGGTGAG CTGTATCTGC GCCTGAGCGA TCATGTGCAA GCCAAGGCAG GCAGCGCCAA CGCCCGGGGT ACCGTGGCCG GGCTGCTCGC ACGCAAGCAA CTGACTGGCG CACAAGGCAA CGCTATCGGC CTGTTCGTGT GGGGCTGGCC GCACGGCCCC GAGCAACAGG CCGAACGCCT CGCCCAGCTG GCACGGCTGG GGTTTCCGGA CAGCCAGCTT TACAGCATCG CCATCGACAC GCTGGAGGAT GCAGCACACT GGCGCGAGCA CTGGTATCGC TCTGCTCTGC CCTTCGCCAC CGACGGTGTA ATCCTGCGCC AGAGCAGTCG GCCACCTGCC GAGCGCTGGC AGGCCAAGGC GCCCTACTGG ATCGCGGCCT GGAAGTATCC CTATGCACAA GCCTTGGCCG AAGTACGCGA CGTGCGCTTT CGGGTTGGCC GCACCGGCAG GGTCACGCCC GTGTTGCACT TGCTGCCGGT CACCCTGGAC GACCGACGGA TTACCCAGGT AAGCCTGGGT TCGCTGGCGC GCTGGCACAC CCTCGACATC CGCCCCGGCG ACCAGGTGGC CATCAGCCTG GCCGGGCTGA CCATTCCACG CCTGGAGCAA GTGGTGCATC GCACGGTCGA ACGCCAGGCG GTCGCCGCGC CTGCGCCCGA CCGCTATCAT GCCCACAGCT GCTGGCAAGC CAGCGAGGGC TGTGATGAGC AATTCATTGC CCGCCTCACC TGGCTTGGCG GTAAACAGGG CCTGGCCTTG CCCCGCACCG GGCCCGGCAC ATGGCGTCGG CTGGTCGAAG CGGGCTTGGT AACGTCCATG ACCGATTGGC TGCAGCTCGA TGCCGAGCGC CTGCAGCAGG CCCCCGGCAT CAGCAGACTC ACCGCGGCAC ACCTGCTGGG CAGTTTCGAC GAAGCCCGCT CACGCCCCTT CGATCAATGG CTGCGCGCCC TTGGCGTGCC CATTGGCAAG CATTTGCCAC TAACTGGCGA CTGGCAGGCG CTGGCTTCAC GCAGCGCCGG GCATTGGCAA ACTGTGCCCG GCATCGGCGC AAAACGCTCG CGCCAACTTG TGGAATTTTT CGCGGCCTCT GAGGTGCAAG CCATCGCCGC ACAGTTGGCC GAAACCGGCA TAGAAGGTTT CCGGCCCCCA CCCCAGCGCA TTGAGCAATG A
|
Protein sequence | MPYLLLFALL FALNAPLARA ASCPQWSPQQ AKAEVAQLRA TLARWDEHYH RQGIALVADE LYDQSRERLN HLQQCFAVGT SPSPLASARG PVPHPVPHTG VDKLADRQAV ARWMAGKSGV WVQPKVDGVA VSLTYQQGRL VQLTSRGDGV NGHDWSRHIP QLDAVTRQLP EALDLHLQGE LYLRLSDHVQ AKAGSANARG TVAGLLARKQ LTGAQGNAIG LFVWGWPHGP EQQAERLAQL ARLGFPDSQL YSIAIDTLED AAHWREHWYR SALPFATDGV ILRQSSRPPA ERWQAKAPYW IAAWKYPYAQ ALAEVRDVRF RVGRTGRVTP VLHLLPVTLD DRRITQVSLG SLARWHTLDI RPGDQVAISL AGLTIPRLEQ VVHRTVERQA VAAPAPDRYH AHSCWQASEG CDEQFIARLT WLGGKQGLAL PRTGPGTWRR LVEAGLVTSM TDWLQLDAER LQQAPGISRL TAAHLLGSFD EARSRPFDQW LRALGVPIGK HLPLTGDWQA LASRSAGHWQ TVPGIGAKRS RQLVEFFAAS EVQAIAAQLA ETGIEGFRPP PQRIEQ
|
| |