Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4819 |
Symbol | putA |
ID | 5191830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5400200 |
End bp | 5404153 |
Gene Length | 3954 bp |
Protein Length | 1317 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640589304 |
Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001270123 |
Protein GI | 148550021 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.952449 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGACTA CCACCCTTGG GGTCAAACTC GACGACCCGA CCCGTGAGCG ACTCAAAGCA GCTGCGCAGT CCATTGACCG CACGCCGCAC TGGTTGATCA AGCAAGCGAT CTTCAACTAT CTGGAGAAGC TCGAGGGTGG CGCCACCCTG ACCGAACTCA ACGGTCATGT CAGCAACCTG GCCGACGATG CCGGTGAAGT CCAGGCCGAC CACAGCCACC AGTGCTTCCT CGAATTTGCC GAAAGCATCT TGCCGCAGTC GGTACTGCGC TCGGCGATCA CCGCTGCCTA CCGCCGACCG GAGCAGGAAG TGGTGCCGAT GCTGCTGGAG CAGGCGCGCC TGAGCGCGCC ACTGGCCGAA GCCACCAACA AGCTGGCCGC GGGCATTGCC GAAAAGCTGC GCAATCAGAA AAGCGCCGGC GGCCGTGCCG GTATCGTCCA GGGCCTGCTG CAAGAATTCT CGCTGTCGTC TCAGGAAGGC GTGGCGCTGA TGTGCCTGGC CGAAGCCCTG CTGCGTATCC CCGACAAAGG TACCCGTGAT GCGCTGATCC GCGACAAGAT CAGTACCGGC AACTGGCAGC CGCACCTGGG CAACAGCCCG TCACTGTTCG TCAACGCCGC CACCTGGGGG CTGCTGCTGA CCGGCAAGCT GGTCAGCACC CATAACGAAA CCGGCCTCAC CTCCTCGCTC ACCCGCATCA TCGGCAAGAG CGGCGAACCG ATGATCCGCA AGGGCGTCGA CATGGCCATG CGCCTGATGG GTGAGCAGTT CGTCACCGGC GAGACCATTG CCGAAGCCCT GGCCAACGCC AGCCGTTTCG AGGCCAAAGG CTTCCGTTAC TCCTACGACA TGCTCGGCGA AGCCGCACTG ACCGAGCACG ACGCGCAGAA GTACCTGGCG TCCTACGAGC AAGCCATCCA CTCGATCGGC AAGGCCTCGC ATGGCCGTGG CATCTATGAA GGCCCAGGTA TCTCGATCAA GCTGTCGGCA CTGCACCCGC GCTACAGCCG CGCCCAGTAC GAGCGCGTGA TGGAGGAGCT GTACCCGCGC CTGCTGTCGC TGACCCTGCT GGCCAAGCAG TACGACATCG GCCTTAACAT CGACGCCGAA GAAGCCGACC GCCTGGAGCT TTCGCTGGAC CTGCTCGAAC GCCTGTGCTT CGAGCCATCC CTGGCTGGCT GGAACGGCAT CGGCTTCGTT ATCCAGGCCT ACCAGAAGCG CTGCCCGTAC GTGATCGACT ACGTCATCGA TCTGGCCAAG CGCAGCCGCC ACCGCCTGAT GATCCGCCTG GTAAAAGGCG CCTACTGGGA CAGCGAGATC AAGCGTGCCC AGGTCGAAGG CCTGGAAGGC TACCCGGTCT ATACCCGCAA GGTGTACACC GACGTGTCCT ACGTCGCCTG CGCCCGCAAG CTGCTGGCCG TGCCAGAAGC CATCTACCCG CAGTTCGCCA CCCACAACGC CCACACCCTG TCGGCCATCT ACCACATTGC CGGGCAGAAC TATTACCCGG GCCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAGCC GCTGTACGAG CAAGTGGTCG GCAAGATTGC CGATGGCAAG CTGAACCGCC CGTGCCGCGT GTATGCACCG GTCGGCACCC ATGAAACGCT GCTGGCCTAC CTGGTGCGCC GCCTGCTGGA AAACGGCGCG AACACCTCGT TCGTCAACCG CATTGCCGAC CACTCGATTT CCATCCAGGA ACTGGTCGCC GACCCGGTGG CCAGCATCGA GCGCATGGGT ACCCAGGAAG GCAGTATCGG CCTGCCGCAC CCACGCATTC CCCTGCCGCG CGACCTGTAT GGCACCGAAC GGGCCAACTC GGCCGGTATC GACATGGCCA ACGAACACCG CCTGGCATCG CTGTCCTGCG CCATGCTGGC CACCGCTCAC AATGACTGGA AGGCTGCCCC GCTACTGGCC TGCGCCGCCA GCGAGAGCGC AGCCGCACCG GTGCTGAACC CGGCTGACCA CCGCGACGTC GTCGGCCATG TGCAGGAGGC CACCGTTGCC GACGTGGACA ACGCCATCCA GTGCGCACTG AACGCCGCAC CGATCTGGCA GGCCACCCCG CCAGCCGAGC GTGCTGCCAT TCTGGAGCGC ACCGCCGACC TGATGGAGGC CGAGATCCAG CCGCTGATGG GCCTGCTCAT CCGCGAGGCC GGCAAGACCT TCGCCAACGC CATTGCCGAA GTGCGTGAAG CCGTGGACTT CCTGCGCTAC TACGCGGTGC AAGCACGTAA CGACTTCAGC AACGACGCCC ACCGCCCACT GGGCCCTGTG GTGTGCATCA GCCCATGGAA CTTCCCGCTG GCGATCTTCA CCGGCCAGGT GGCCGCAGCC CTGGCTGCCG GCAACCCGGT ACTGGCCAAG CCTGCCGAGC AAACCCCACT GATCGCCGCC CAGGCCGTGC GCCTGCTGCT GGAAGCTGGC ATCCCAGAAG GCGTGCTGCA GCTGCTGCCT GGCCGCGGTG AAACCGTCGG AGCCGGCCTG GTCGGGGACG AACGCGTCAA AGGTGTGATG TTCACCGGCT CCACTGAAGT GGCCCGCCTG CTGCAGCGCA ACGTCGCTGG CCGTCTGGAC AACCAGGGCC GCCCGATCCC GCTGATCGCC GAAACCGGCG GCCAGAACGC GATGATCGTC GACTCCTCGG CACTGACCGA ACAGGTCGTG ATCGACGTGG TGTCCTCGGC CTTCGACAGT GCCGGCCAGC GTTGCTCGGC CCTGCGCGTA CTGTGCCTGC AGGAAGACTC CGCCGACCGC GTAATCGAGA TGCTCAAGGG CGCCATGGCT GAAAGCCGCC TGGGCTGCCC GGACCGCCTG GCCGTGGACA TCGGCCCGGT GATCGATGCC GAAGCCAAGG CTGGCATCGA GAAGCACATC CAGGGCATGC GCGAGAAAGG CCGCCCGGTC TACCAAGTCG CTATTGCCGA TGCTGCCGAG ATCAAGCGTG GCACTTTCGT CATGCCAACC CTGATCGAGC TGGACAGCTT CGACGAGCTG AAGCGCGAAA TCTTCGGCCC CGTGCTGCAC GTGGTGCGCT ACAACCGCCG CAATCTGGAC CAGCTGATCG AGCAGATCAA CAACTCCGGC TACGGCCTGA CCCTCGGCGT GCACACCCGT ATCGACGAGA CCATCGCCAA GGTGGTGGAA ACCGCCAACG CCGGCAACAT GTACGTCAAC CGCAACATTG TGGGTGCAGT GGTGGGCGTG CAGCCGTTCG GTGGTGAAGG CCTGTCGGGC ACCGGCCCGA AAGCCGGCGG CCCGCTGTAC CTCTACCGCC TGCTGTCGAC CCGCCCGGCC GACGCCATCG GCCGCCACTT CCAGCAGCAG GACGGCGAAG GCAAGCCGGA CCGCACCCTG CACGAACAGC TGGTCAAGCC GCTGCACGGC CTGAAGGCCT GGGCCGAGAG CAACCAGCTG GCCGACCTGG CCGCGCTGTG CAGCCAGTTC GCCAGCCAGT CGCAGAGCGG CATCGCCCGC CTGCTGCCTG GCCCGACCGG CGAGCGCAAC AGCTACACCA TTCTGCCGCG TGAGCACGTG CTGTGCCTGG CCGACAACGA AACCGACCTG CTGGCGCAGT TCGCCGCAGT ACTGGCCGTT GGCAGCTCGG CGGTGTGGGT TGACGGTGAA CCGGGCAAGG CCCTGCGCGC CCGCCTGCCG CGTGAGCTGC AGGCCAAGGT GAAGCTGGTC GCGGACTGGA ACAAGGATGA AGTAGCGTTC GACGCCGTGA TCCACCATGG CGACTCGGAC CAGCTGCGCG GCGTATGCCA GCAGGTGGCC AAGCGAGCCG GGGCGATCGT TGGGGTGCAC GGGCTGTCCA GCGGTGATCA CCAGATTGCG CTGGAGCGCC TGGTCATCGA GCGCGCGGTG AGCGTGAACA CTGCGGCGGC GGGTGGTAAC GCCAGCCTGA TGACCATTGG CTAA
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Protein sequence | MATTTLGVKL DDPTRERLKA AAQSIDRTPH WLIKQAIFNY LEKLEGGATL TELNGHVSNL ADDAGEVQAD HSHQCFLEFA ESILPQSVLR SAITAAYRRP EQEVVPMLLE QARLSAPLAE ATNKLAAGIA EKLRNQKSAG GRAGIVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKGTRD ALIRDKISTG NWQPHLGNSP SLFVNAATWG LLLTGKLVST HNETGLTSSL TRIIGKSGEP MIRKGVDMAM RLMGEQFVTG ETIAEALANA SRFEAKGFRY SYDMLGEAAL TEHDAQKYLA SYEQAIHSIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMEELYPR LLSLTLLAKQ YDIGLNIDAE EADRLELSLD LLERLCFEPS LAGWNGIGFV IQAYQKRCPY VIDYVIDLAK RSRHRLMIRL VKGAYWDSEI KRAQVEGLEG YPVYTRKVYT DVSYVACARK LLAVPEAIYP QFATHNAHTL SAIYHIAGQN YYPGQYEFQC LHGMGEPLYE QVVGKIADGK LNRPCRVYAP VGTHETLLAY LVRRLLENGA NTSFVNRIAD HSISIQELVA DPVASIERMG TQEGSIGLPH PRIPLPRDLY GTERANSAGI DMANEHRLAS LSCAMLATAH NDWKAAPLLA CAASESAAAP VLNPADHRDV VGHVQEATVA DVDNAIQCAL NAAPIWQATP PAERAAILER TADLMEAEIQ PLMGLLIREA GKTFANAIAE VREAVDFLRY YAVQARNDFS NDAHRPLGPV VCISPWNFPL AIFTGQVAAA LAAGNPVLAK PAEQTPLIAA QAVRLLLEAG IPEGVLQLLP GRGETVGAGL VGDERVKGVM FTGSTEVARL LQRNVAGRLD NQGRPIPLIA ETGGQNAMIV DSSALTEQVV IDVVSSAFDS AGQRCSALRV LCLQEDSADR VIEMLKGAMA ESRLGCPDRL AVDIGPVIDA EAKAGIEKHI QGMREKGRPV YQVAIADAAE IKRGTFVMPT LIELDSFDEL KREIFGPVLH VVRYNRRNLD QLIEQINNSG YGLTLGVHTR IDETIAKVVE TANAGNMYVN RNIVGAVVGV QPFGGEGLSG TGPKAGGPLY LYRLLSTRPA DAIGRHFQQQ DGEGKPDRTL HEQLVKPLHG LKAWAESNQL ADLAALCSQF ASQSQSGIAR LLPGPTGERN SYTILPREHV LCLADNETDL LAQFAAVLAV GSSAVWVDGE PGKALRARLP RELQAKVKLV ADWNKDEVAF DAVIHHGDSD QLRGVCQQVA KRAGAIVGVH GLSSGDHQIA LERLVIERAV SVNTAAAGGN ASLMTIG
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