Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4778 |
Symbol | |
ID | 5192663 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5351854 |
End bp | 5352396 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640589263 |
Product | oligoribonuclease |
Protein accession | YP_001270082 |
Protein GI | 148549980 |
COG category | [A] RNA processing and modification |
COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.89409 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAACC CACAGAACCT GATCTGGATC GACCTGGAAA TGACCGGCCT GGATCCGGAC AGCGACGTCA TCATCGAAAT GGCCACCATC GTTACCGACA GCGAGCTCAA TACCTTGGCC GAAGGCCCGG TAATCGCCAT CCACCACAGT GACGAAGTGC TGGCGCGCAT GGACGAGTGG AACACCCGCA CCCATGGCGC TTCGGGGCTG ACCCAGCGCG TGCGCGAGAG CAAGGTCAGC ATGGCCGAAG CCGAGGCACA GACCATCGCC TTCCTCGAGC AGTGGGTGCC TAAAGGCAAG TCGCCGATCT GCGGCAACAG CATCTGCCAG GATCGTCGTT TCCTCTACCG CCACATGCGC AACCTGGAAA ACTACTTCCA CTACCGCAAC CTGGATGTCT CCACCCTCAA GGAGCTGGCC GCGCGCTGGG CGCCGGACGT GCGTGACAGC TTCAAGAAGG GCAATACCCA CCTGGCGCTG GACGATATCC GCGAATCGAT CGCCGAACTG CGTCACTATC GCGAGCACTT CATCAAGCTG TGA
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Protein sequence | MQNPQNLIWI DLEMTGLDPD SDVIIEMATI VTDSELNTLA EGPVIAIHHS DEVLARMDEW NTRTHGASGL TQRVRESKVS MAEAEAQTIA FLEQWVPKGK SPICGNSICQ DRRFLYRHMR NLENYFHYRN LDVSTLKELA ARWAPDVRDS FKKGNTHLAL DDIRESIAEL RHYREHFIKL
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