| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4716 |
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| Symbol | |
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| ID | 5193241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5281626 |
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| End bp | 5283692 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640589199 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_001270020 |
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| Protein GI | 148549918 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.129936 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCT GCACCCCTGT TTTTGCCTTG TCCCTGCGTG GGACCATCGC CGCCCTGTGC
GGTTCGCTGC TCGCACCCAT GGCCCTGGCC GCCGACCCTG GCCATGAAGG CCATGTGCAC
GACGCACCCG AGCTGAGCCC GACGGTGATC ACCGCCGTGG CCCCGAGTTC ACCGCTGACC
GTGGTCACCA ACCCGAAAGA CCCGCGCCAG CCAGTGCCGG CCAGCGACGG CGCCGACTAC
CTGAAGACCA TCCCCGGCTT CTCGGCAATC CGTGCTGGCG GTACCAACGG CGACCCGGTA
CTGCGCGGCA TGTTCGGCTC GCGCCTGAAC ATCCTCACCA ACGGTGGCTT GATGCTTGGC
GCCTGCCCCA ATCGCATGGA CGCGCCCACG TCCTATATTT CGCCAGAAAC CTACGACCGC
CTGACCGTGA TCAAAGGCCC GCAGAGCGTC ATCTGGGGCC CCGGCGGCTC GGCGGGCACC
ATCCTCTTCG AGCGCGAACC GGAGAAATTC GGCACCCTCG GCAGCCGCGT CAACGCAAGC
CTGCTGGCCG GCTCCAACGG CCGCTTCGAC AAGGTGCTGG ATGCCGCGGC TGGCAACAGT
CAGGCCTATG CCCGCTTCGT CGGTAACCAG TCACGTTCGG ACGACTACCA CGACGGCAAC
AACGACACCG TGCCGTCGCG CTGGGACAAG TGGAACGGCG ATGTCGCCCT CGGCTGGACA
CCCGACCAGG ACACCTTGCT GGAACTGACG GCCGGCAAGG GTGATGGCGA AGCCCGCTAC
GCCGGGCGCG GCATGGACGG CTCGCAGTTC AAGCGCGAAA GCCTGGGCCT GCGCTTTGAA
AAGTCCAACC TCGGCGAGGT GCTCGACAAA GTCGAGGCGC AGGTCTACTA CAACTACGCC
GACCATGTGA TGGACAACTA CAGCCTGCGC ACGCCGTCGG GTAGCGGCAT GATGGGCATG
CCGATGGTCA GCAACGTCGA CCGCCGCACC ATGGGTGCAC GCATCAAGGC CACCTGGCGC
TGGGCCGACG TGCAGCTGAT CAGCGGCATC GACGCGCAAA CCAACGAACA TCGCAAGCGT
GGCGGTATGG GTGTGGACGC ACACAAGGGC CAGGCCTGGA CCAAGGACGC CGACTTCCAC
AACTACGGCG CCTTCAGCGA ACTGACCTGG TACGTCAGCG GCGAGGACCG CTTGATTACC
GGCGCCCGTC TGGACCGCGC CTCGGCGCGT GACTTCCGCA AAACCAGCGC CACCGAAGGC
GACACCCGTG CCGACACCCT GCCGAGCGGT TTCATCCGCT ACGAGCACGA CCTTGCAGCC
ATTCCAGCCA CCACCTACAT CGGCCTCGGC CACGCCCAGC GCTTCCCCGA CTACTGGGAG
CTGTTCTCAC CCAAGCTGGC ACCCGCCGGG GCAGCCAACG CCTTCGACGG CATCAAGCCA
GAGAAAACCA CCCAGCTCGA CTTCGGCATC CAGTACCGCA CCGAGCGCCT GGAGGCCTGG
GCTTCGGGCT ATGTCGGGCA GATTCGCGAC TACATCCTGT TCGACTACCG CACCGGCATG
ATGGGCATGA GCACCTCGCA GGCGCAGAAC ATCGACGCCC GCATCATGGG TGGCGAACTG
GGCGCCGCCT ACCAGCTGAC TGACAACTGG AAGGCCGACG CCACGCTTGC CTACGCTTGG
GGCAAGAACA GCAGTGACGG CAAGGCGCTA CCTCAAATGC CTCCCCTGGA AAGCCGCCTG
GGCCTGACCT ACAGCCGCGA TGTGTGGAGC GTCGGCGCAC TGTGGCGCCT GGTGGCGGCG
CAGAACCGCA TTGCCGAAAA CCAAGGGAAC GTCGTCGGCA AGGACTATGA CAAGAGCGCC
GGCTTCGGCG TGTTCTCCCT GAACGGCGCC TACAAGGTGA ACAACAACCT CAAGCTCAGC
GCAGGGGTCG ACAACCTGTT CGACAAAACC TACGCCGAGC ACTTGAACCT GGCCGGGAAC
GCCGGGTTCG GCTACCCGGC TACAGATCCA CAGCCGGTCA ACGAGCCAGG CAGGACCTTC
TGGACCAAGG TCGATTTCAG CTTCTGA
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| Protein sequence | MSGCTPVFAL SLRGTIAALC GSLLAPMALA ADPGHEGHVH DAPELSPTVI TAVAPSSPLT
VVTNPKDPRQ PVPASDGADY LKTIPGFSAI RAGGTNGDPV LRGMFGSRLN ILTNGGLMLG
ACPNRMDAPT SYISPETYDR LTVIKGPQSV IWGPGGSAGT ILFEREPEKF GTLGSRVNAS
LLAGSNGRFD KVLDAAAGNS QAYARFVGNQ SRSDDYHDGN NDTVPSRWDK WNGDVALGWT
PDQDTLLELT AGKGDGEARY AGRGMDGSQF KRESLGLRFE KSNLGEVLDK VEAQVYYNYA
DHVMDNYSLR TPSGSGMMGM PMVSNVDRRT MGARIKATWR WADVQLISGI DAQTNEHRKR
GGMGVDAHKG QAWTKDADFH NYGAFSELTW YVSGEDRLIT GARLDRASAR DFRKTSATEG
DTRADTLPSG FIRYEHDLAA IPATTYIGLG HAQRFPDYWE LFSPKLAPAG AANAFDGIKP
EKTTQLDFGI QYRTERLEAW ASGYVGQIRD YILFDYRTGM MGMSTSQAQN IDARIMGGEL
GAAYQLTDNW KADATLAYAW GKNSSDGKAL PQMPPLESRL GLTYSRDVWS VGALWRLVAA
QNRIAENQGN VVGKDYDKSA GFGVFSLNGA YKVNNNLKLS AGVDNLFDKT YAEHLNLAGN
AGFGYPATDP QPVNEPGRTF WTKVDFSF
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